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. 2020 Aug 12;18:2174–2184. doi: 10.1016/j.csbj.2020.08.006

Table 1.

The table contains a list of interacting residues. Based on the dAffinity, dStability, and Predicted ΔΔG was used to understand the impact of each substitution when changed to alanine. The significant substitutions which reduce the binding affinity and stability of the Protein-RNA complex are given in bold.

Index Residue Position dAffinity dStability Predicted ΔΔG Outcome
1 D103A −0.218208126 0.7058154 5.07 Increased affinity
2 E174A −0.627432562 1.099226294 4.5735 Increased affinity
3 F171A 0.131910418 2.094553371 −8.7225 Reduced affinity
4 G170A 0.799354909 0.041698953 −5.559 Reduced affinity
5 G175A −0.632812623 0.687884896 6.7065 Increased affinity
6 G178A −1.332230401 0.668020025 9.135 Increased affinity
7 G60A −0.655284048 0.079444368 0.4935 Increased affinity
8 H59A 3.80850533 0.429009885 −8.3685 Reduced affinity
9 K102A 1.651298071 0.815469681 1.0365 Increased affinity
10 K169A 1.957372005 −0.315900659 −1.6425 Reduced affinity
11 K61A 2.456900907 −0.43984319 −2.547 Reduced affinity
12 L104A 3.159796329 1.738786997 5.541 Increased affinity
13 P168A 0.064328214 1.125976312 0.3195 Increased affinity
14 R107A 0.831868936 1.887304986 −1.0755 Reduced affinity
15 R177A 6.054382342 0.310284166 4.212 Increased affinity
16 S105A 0.957764581 0.470427697 −1.6065 Reduced affinity
17 S176A 0.304609561 0.649918458 1.368 Increased affinity
18 T57A 0.936589745 1.111603419 −7.2075 Reduced affinity
19 Y172A 6.632200002 2.154790282 −0.438 Reduced affinity

Molecular Dynamics Simulation.