Table 2.
Phylum-level differences between the duodenal and stool microbiomes in the same subjects (Group 1, n = 53)
| Duodenal microbiome versus stool microbiome (n = 53) | |||
|---|---|---|---|
| Phylum | Fold Change (FC) | log2(FC) | FDR P value |
| Bacteroidetes | 0.10753 | − 3.2172 | 2.61E−20 |
| Verrucomicrobia | 0.002806 | − 8.4771 | 1.19E−16 |
| TM7 | 129.17 | 7.0131 | 1.19E−16 |
| Actinobacteria | 8.837 | 3.1436 | 1.91E−15 |
| Fusobacteria | 7.2287 | 2.8537 | 3.29E−13 |
| Cyanobacteria | 0.040278 | − 4.6339 | 1.47E−08 |
| Spirochaetes | 98.719 | 6.6253 | 5.18E−06 |
| SR1 | 422.43 | 8.7226 | 0.000274 |
| Proteobacteria | 3.6101 | 1.852 | 0.000505 |
| Euryarchaeota | 0.005182 | − 7.5924 | 0.000702 |
| Chloroflexi | 32.155 | 5.007 | 0.003565 |
| Lentisphaerae | 0.009193 | − 6.7653 | 0.003959 |
| Firmicutes | 1.4011 | 0.4866 | 0.004179 |
| Thermi | 13.653 | 3.7712 | 0.06949 |