Table 2.

Comparison of CHO global spectral library and uncalibrated combined-search spectral library in CHO-K1 WCL SWATH-MS data.

Spectral library	CHO global spectral library	Uncalibrated combined-search spectral library
Total identified proteins	6,445	4,310
20% CV cutoff	4,717	2,537
10% CV cutoff	3,183	1,414
Median CV	10.16%	15.47%
Total identified peptides	23,971	14,061
20% CV cutoff	16,919	8,252
10% CV cutoff	10,325	4,585
Median CV	11.73%	15.42%