Table 1.

Quality statistics of read numbers of foxtail millet transcriptomics.

Sample name	Raw reads	Clean reads	Clean bases	Error rate (%)	Q20 (%)	Q30 (%)	GC content (%)	Total mapped	Multiple mapped	Uniquely mapped
YG2C1	53,517,332	50,631,174	7.59G	0.03	97.50	93.55	60.85	44,815,831 (88.51%)	574,282 (1.13%)	44,241,549 (87.38%)
YG2C2	53,333,334	51,643,874	7.75G	0.03	95.23	88.79	59.17	45,003,025 (87.14%)	597,010 (1.16%)	44,406,015 (85.99%)
YG2C3	53,333,334	51,618,960	7.74G	0.03	95.77	89.80	59.18	45,510,138 (88.17%)	594,516 (1.15%)	44,915,622 (87.01%)
YG2T1	49,353,206	46,959,552	7.04G	0.03	97.13	92.87	62.48	40,683,883 (86.64%)	625,995 (1.33%)	40,057,888 (85.3%)
YG2T2	46,628,886	44,137,084	6.62G	0.03	96.40	91.27	62.18	38,042,346 (86.19%)	568,696 (1.29%)	37,473,650 (84.9%)
YG2T3	49,504,784	47,304,220	7.1G	0.03	96.14	90.81	61.98	40,710,673 (86.06%)	629,182 (1.33%)	40,081,491 (84.73%)
An04C1	53,333,334	50,961,024	7.64G	0.03	96.11	90.76	59.30	45,945,652 (90.16%)	596,842 (1.17%)	45,348,810 (88.99%)
An04C2	53,333,334	51,068,190	7.66G	0.03	96.00	90.51	59.17	45,994,169 (90.06%)	603,059 (1.18%)	45,391,110 (88.88%)
An04C3	53,333,334	50,982,896	7.65G	0.03	95.49	89.42	58.58	45,716,638 (89.67%)	613,002 (1.2%)	45,103,636 (88.47%)
An04T1	53,333,334	50,723,764	7.61G	0.03	97.17	92.87	60.09	44,572,801 (87.87%)	721,076 (1.42%)	43,851,725 (86.45%)
An04T2	53,333,334	50,518,270	7.58G	0.03	97.47	93.46	60.52	44,541,380 (88.17%)	716,572 (1.42%)	43,824,808 (86.75%)
An04T3	54,235,694	51,145,870	7.67G	0.03	97.49	93.61	61.92	44,708,640 (87.41%)	689,511 (1.35%)	44,019,129 (86.07%)

Total Raw Reads: The number of reads before filtering; Total Clean Reads: Filtered reads; Total Clean Bases (Gb): Total number of bases after filtration; Q20 (%): Proportion of nucleotides with a quality value larger than 20 in the filtered reads; Q30 (%): Proportion of nucleotides with a quality value larger than 30 in the filtered reads.