TABLE 1.
The number of decomposition enzymes detected by RNA‐Seq
| Enzyme classes | CAZyme module | No. of decomposition enzymes in the genome | No. of decomposition enzymes detected by RNA‐Seq | No. of decomposition enzymes in DEGs by RNA‐Seq |
|---|---|---|---|---|
| Auxiliary activities | AA1 | 1 | 1 | |
| AA2 | 21 | 19 | 10 | |
| AA3 | 38 | 30 | 12 | |
| AA4 | 1 | |||
| AA5 | 7 | 8 | 6 | |
| AA6 | 5 | 4 | 3 | |
| AA7 | 10 | 6 | 3 | |
| AA8 | 2 | 2 | ||
| AA9 | 27 | 20 | 7 | |
| Carbohydrate esterases | CE1 | 18 | 11 | 3 |
| CE10 | 42 | 31 | 6 | |
| CE12 | 3 | 2 | ||
| CE14 | 1 | 1 | ||
| CE15 | 2 | 2 | ||
| CE16 | 14 | 6 | 3 | |
| CE2 | 1 | 1 | ||
| CE3 | 1 | 1 | ||
| CE4 | 5 | 3 | 3 | |
| CE8 | 2 | 2 | 1 | |
| CE9 | 1 | |||
| GH1 | 2 | 2 | 1 | |
| Glycoside hydrolases | GH10 | 4 | 5 | 4 |
| GH105 | 3 | 3 | 1 | |
| GH109 | 8 | 8 | 5 | |
| GH115 | 2 | 2 | 1 | |
| GH12 | 2 | 1 | ||
| GH125 | 1 | 1 | ||
| GH127 | 1 | 1 | ||
| GH128 | 5 | 3 | 2 | |
| GH13 | 9 | 9 | 6 | |
| GH131 | 3 | |||
| GH15 | 2 | 2 | ||
| GH16 | 19 | 17 | 5 | |
| GH17 | 1 | 1 | ||
| GH18 | 13 | 10 | 3 | |
| GH2 | 3 | 2 | 2 | |
| GH20 | 4 | 2 | ||
| GH23 | 1 | |||
| GH24 | 1 | 1 | ||
| GH25 | 1 | 1 | ||
| GH27 | 3 | 3 | 1 | |
| GH28 | 6 | 4 | ||
| GH3 | 8 | 8 | 4 | |
| GH30 | 1 | 1 | 1 | |
| GH31 | 4 | 5 | 3 | |
| GH35 | 4 | 4 | ||
| GH37 | 2 | 1 | 1 | |
| GH38 | 1 | |||
| GH43 | 6 | 6 | 4 | |
| GH47 | 6 | 3 | ||
| GH5 | 20 | 16 | 8 | |
| GH51 | 2 | 2 | 1 | |
| GH53 | 1 | 1 | ||
| GH55 | 3 | 3 | 1 | |
| GH6 | 1 | 1 | 1 | |
| GH63 | 2 | 1 | ||
| GH7 | 5 | 4 | 1 | |
| GH71 | 3 | 3 | 1 | |
| GH72 | 1 | 1 | ||
| GH74 | 3 | 3 | ||
| GH76 | 2 | 1 | ||
| GH78 | 2 | 2 | ||
| GH79 | 7 | 9 | 6 | |
| GH85 | 1 | 1 | ||
| GH88 | 1 | 1 | ||
| GH89 | 1 | 1 | ||
| GH9 | 1 | 1 | ||
| GH92 | 3 | 3 | 1 | |
| GH95 | 1 | 1 | ||
| GH99 | 1 | |||
| Polysaccharide lyases | PL1 | 1 | 1 | |
| PL12 | 1 | 1 | ||
| PL14 | 5 | 6 | 5 | |
| PL3 | 2 | 2 | ||
| PL4 | 1 | |||
| PL5 | 1 | 2 | 2 | |
| PL8 | 1 | 1 | ||
| Total | 401 | 324 | 128 |