TABLE A2.
Sample | Raw reads | Number of input reads | Cleaned length | Uniquely mapped reads number | Uniquely mapped reads (%) |
---|---|---|---|---|---|
6h_ck1 | 3,713,910 | 3,531,468 | 129.69 | 2,491,981 | 70.57 |
6h_ck2 | 3,618,291 | 3,416,852 | 129.055 | 2,205,290 | 64.54 |
6h_T1 | 3,644,390 | 3,577,152 | 128.745 | 2,802,466 | 78.34 |
6h_T2 | 4,379,858 | 4,280,639 | 128.835 | 3,282,569 | 76.68 |
12h_ck1 | 3,832,620 | 3,691,873 | 129.505 | 2,706,111 | 73.30 |
12h_ck2 | 3,806,801 | 3,651,869 | 129.09 | 2,603,461 | 71.29 |
12h_T1 | 3,493,777 | 3,325,461 | 125.865 | 2,458,201 | 73.92 |
12h_T2 | 4,020,571 | 3,899,676 | 128.9 | 2,967,516 | 76.10 |
24h_ck1 | 3,609,635 | 3,388,118 | 128.875 | 2,326,955 | 68.68 |
24h_ck2 | 3,684,973 | 3,497,767 | 129.655 | 2,466,212 | 70.51 |
24h_T1 | 4,831,627 | 4,684,474 | 128.62 | 3,554,342 | 75.87 |
24h_T2 | 4,567,295 | 4,436,833 | 128.9 | 3,395,508 | 76.53 |
48h_ck1 | 3,638,776 | 3,456,573 | 129.255 | 2,500,095 | 72.33 |
48h_ck2 | 3,594,592 | 3,405,731 | 128.51 | 2,473,909 | 72.64 |
48h_T1 | 4,499,718 | 4,347,471 | 128.275 | 3,264,957 | 75.10 |
48h_T2 | 4,500,181 | 4,353,762 | 128.58 | 3,277,084 | 75.27 |
The number of reads were expressed in pairs.