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Primer and probe sets for the TaqMan assays
| Virus | Sense primer (5’-3’) | Probe (5’-3’) | Antisense primer (5’-3’) | Reference |
|---|---|---|---|---|
| VEEV | TCCATGCTAATGCYAGAGCGTTTTCGCA | Fam-TGATCGARACGGAGGTRGAMCCATCC-Tamra | TGGCGCACTTCCAATGTCHAGGAT | Vina-Rodriqez et al. [45] |
| RRV | TTGCCGGTGGGTAGAGAGAA | Fam-ACCACACTTTGGCGTAGAGC-Tamra | TCTGGCGGTGTATGCATGTC | This studya |
| JEV | ATCTGGTGYGGYAGTCTCA | Fam-CGGAACGCGAWCCAGGGCAA-Tamra | CGCGTAGATGTTCTCAGCCC | Pyke et al. [81] |
aDesigned using Primer-BLAST [82]
