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. 2020 Aug 13;15(8):e0236581. doi: 10.1371/journal.pone.0236581

Table 1. Environmental and anthropogenic predictors tested for correlation against the presence of hotspot of highly pathogenic avian influenza virus type H5Nx in Taiwan.

Abbreviation Description Transform Remarks
Farm-related variables
rchickenD Registered chicken farm density # registered chicken farm/grid* Removed due to high collinearity
rduckD Registered duck farm density # registered duck farm/grid Removed due to high collinearity
rgooseD Registered goose farm density # registered goose farm/grid Removed due to high collinearity
allrD Registered farm density # registered farm/grid Categorized based on Percentile (0.333, 0.667, 1) = (2, 7, 154)
allnwaterD Chicken farm density # chicken farm/grid Removed due to high collinearity
allwaterD Waterfowl farm density # waterfowl farm/grid Removed due to high collinearity
PHI Poultry heterogeneity index 1-{|Pc-Pw|/Pc+Pw}§ Continuous
Farm biosecurity-related variables
nrnwaterD Non-registered non-waterfowl farm density # non-registered farm/grid GAM = (19, 29, 48)
nrwaterD Non-registered waterfowl farm density # non-registered farm/grid Percentile (0.333, 0.667, 1) = (0, 1, 506)
rbroilerD Broiler chicken density (Good biosecurity) # broiler chicken/grid GAM = (2, 12)
rlayerD Layer chicken density (medium biosecurity) # layer chicken/grid Percentile (0.333, 0.667, 1) = (0, 1, 84)
rnativeD Native chicken density (poor biosecurity) # native chicken/grid Continuous
butcherD Slaughter house density # slaughter house/grid Continuous
Wildbird-related variables
wetlandA % wetland coverage Wetland coverage area/grid Continuous
allrice % rice crop coverage Rice crop coverage area/grid Continuous
allcrop % all crop coverage (exclude rice crop) All cropping area/grid Continuous
Anthropological variables
popD Population density Human population/grid Categorized based on Percentile (0.333, 0.667, 1) = (371, 842)

§Pc: number of chicken divided by number of poultry; Pw: number of waterfowl/number of poultry

*each grid is equivalent to 9 km2 or 3 km x 3 km for each side.