Table 1.
Protein/peptide | Amino acid sequence | Number of amino acids | Molecular weight (kDa) | Isoelectric point | Instability index | Aliphatic index | GRAVY |
---|---|---|---|---|---|---|---|
ChimeraT | YIMSGPARYVYFHMVLPVEAQGGRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNEGGNYDPNVWCAVPNCITCDRLDPSNRGGVRVLYQPNVENLYHIYRHIGVNAETVL | 109 | 12.31 | 5.40 | 51.03 | 84.77 | −0.245 |
LiHyp1 epitope | YIMSGPARYVYFHMVLPVEAQ | 21 | 2.47 | 6.75 | 50.78 | 88.10 | 0.386 |
EIF5a epitope | RLEDQAPSTHNVEVPFVKTFTYSVLDIQPNE | 31 | 3.54 | 4.50 | 57.65 | 78.39 | −0.535 |
LiHyp2 epitope | NYDPNVWCAVPNCITCDRLDPSNR | 24 | 2.76 | 4.43 | 39.18 | 60.83 | −0.667 |
PHB epitope | VRVLYQPNVENLYHIYRHIGVNAETVL | 27 | 3.21 | 6.90 | 54.73 | 129.63 | 0.007 |
GRAVY grand average of hydropathy.
ChimeraT was constructed using amino acid sequences containing selected CD4+ and CD8+ T-cell epitopes from Prohibitin (PHB; Amino Acids 104–131), EIF5a (Amino Acids 71–101), LiHyp1 (Amino Acids 163–183) and LiHyp2 (Amino Acids 416–439) proteins.