Table 1.

Summary of assembled sequence lengths and predicted genes in the Harukei-3 genome. DNA sequence lengths of each chromosome and unanchored sequence are compared between Harukei-3 ver. 1.41 reference (left) and DHL92 CM3.6.1/4.0 reference (right). In Harukei-3, organelle genomes are assembled as one scaffold.

Harukei-3 (ver. 1.41)	Total (kb)	Determined (kb)	Undetermined (“NNN”, kb)	Gap	Gene count	DHL92 (CM3.6.1/4.0)	Total (kb)	Determined (kb)	Undetermined (“NNN”, kb)	Gap	Gene count
chr01	36,940	36,524	416	16	3703	chr01	37,038	31,291	5747	2273	2807
chr02	24,998	24,882	116	4	2493	chr02	27,065	23,792	3273	1536	2064
chr03	30,037	29,911	126	2	2798	chr03	31,667	26,381	5286	1887	2229
chr04	34,190	33,842	348	9	3660	chr04	34,318	29,761	4557	2099	2833
chr05	29,725	29,488	236	10	2603	chr05	29,324	24,896	4428	1864	2021
chr06	36,910	36,514	396	12	3580	chr06	38,297	31,984	6313	2260	2847
chr07	27,657	27,296	360	7	2801	chr07	28,958	24,137	4822	1594	2235
chr08	34,052	33,922	130	4	3243	chr08	34,765	28,980	5786	2079	2569
chr09	24,854	24,615	239	6	2588	chr09	25,243	21,670	3573	1577	2016
chr10	28,914	28,643	271	6	2617	chr10	26,664	22,706	3958	1540	1801
chr11	34,404	34,011	393	7	3307	chr11	34,457	28,852	5605	2001	2535
chr12	27,488	26,893	595	11	2701	chr12	27,564	23,699	3865	1735	2056
Total	370,168	366,542	3625	94	36,094	Total	375,360	318,148	57,212	22,445	28,013
Unanchored	7215	2045	5170	43	645	Unanchored	41,642	19,177	22,465	22,207	1967
Mitochondria	3273	3249	24	5	317
Chloroplast1	156	156	0	0	66
Chloroplast2	155	155	0	0	82
Chloroplast3	96	96	0	0	50