Table 2.
SNP allelic changes identified in major effect QTLs.
| Major effect QTLs identified in 105 RILs | p-value | R2 value (%) | High yielding RILs | Low yielding RILs | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| QTL name | Flanking SSR markers | SSR Marker position (Mb) | Name of the SNP marker | SNP marker position (Mb) | SNP allelic change | RIL-1 and 2 | RIL-3 and 4 | RIL-5 and 6 | RIL-7 and 8 | RIL-9 and 10 | RIL-11 and 12 | RIL-13 and 14 | RIL-15 and 16 | RIL-17 and 18 | RIL-19 and 20 | RIL-21 and 22 | RIL-23 and 24 | ||
| qYLD3-1 | RM517-RM15679 | 6.1–26.8 | S3_27516811 | 27.51 | A/G | 0.02 | 40.3 | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | GG |
| qPW3-1 | RM15679-JGT03-26.8 | 26.8 | S3_27516811 | 27.51 | A/G | 0.14 | 20 | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | GG |
| qPL3-1 | RM517-RM15679 | 6.1–26.8 | S3_27516811 | 27.51 | A/G | 0.02 | 40.3 | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | GG |
| qFLW4-1 | RM6909-RM252 | 32–24 | S4_24002530 | 24 | C/T | 0.02 | 50.7 | CC | CC | CC | CC | NN | CC | TT | TT | TT | TT | TT | TT |
| qPH12-1 | JGT12-0.2-RM28275 | 0.2–19.7 | S12_14867709 | 14.86 | G/A | 0.04 | 44.8 | GG | GG | GG | GG | NN | GG | AA | AA | AA | AA | AA | AA |
N any nucleotide, YLD total grain yield/plant(g), PW panicle weight (g), PH plant height (cm), FLW flag leaf width (cm), PL panicle length (cm), R2 value (%) the cumulative phenotypic variance (%).