Antibodies |
|
NEK7 Antibody |
Abcam |
ab133514 |
V5 Antibody |
Life technologie Europe BV |
R960-25 |
Anti-HA Antibody |
Lucerna Chemie AG |
HA-11, 901513 |
secondary anti-rabbit IgG HRP-conjugated antibody |
Cell Signaling |
#7074S; RRID:AB_2099233
|
Alexa Fluor® 488 anti-Vimentin |
Biolegend |
#677809; RRID:AB_2650955
|
Alexa Fluor® 647 anti-Tubulin Beta 3 |
Biolegend |
#657406; RRID:AB_2563610
|
DAPI |
Sigma Aldrich |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Strep-Tactin Sepharose |
IBA |
2-1201-010 |
X-Treme Gene 9 DNA Transfection Reagent |
Roche |
06365787001 |
Hygromycin B |
Invitrogen |
10687010 |
BlasticidinS Hcl, 50 mg |
Life Technologies |
R21001 |
Biotin |
Sigma |
B4501-1G |
Doxycycline Hyclate |
Sigma |
D9891-5G |
|
Critical Commercial Assays |
|
jetPRIME transfection Reagent |
Chemie Brunschwig AG |
114-15 |
Lipofectamine RNAiMAX |
Invitrogen |
13778075 |
Adriamycin |
Sigma |
D1515 |
|
Deposited Data |
|
Processed Protein-Protein Interaction data |
This paper |
Table S2 |
Raw Mass Spectrometry Data and Peptide Identifications |
This paper |
Peptide Atlas: PASS01469 https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_View?identifier=PASS01469. |
|
Experimental Models: Cell Lines |
|
Human: Flp-Ln T-Rex 293 Cell Line |
Thermo Fisher Scientific (Invitrogen) |
R78007 |
Human: A549 Cell Line |
ATCC |
ATCC® CCL-185 |
Human: T-REx-HeLa CCL2 Flp-In cells |
Thermo Fisher Scientific (Invitrogen) |
R71407 |
Human: LN-229 (glioblastoma cell line) |
ATCC |
ATCC® CRL-2611 |
Human: SKOV3 (ovarian cancer cell line) |
ATCC |
ATCC® HTB-77 |
|
Oligonucleotides |
|
Silencer select GSG2 siRNA |
ThermoFisher |
s38320 |
Silencer select PIM3 siRNA |
ThermoFisher |
s53946 |
Silencer select PIM3 siRNA |
ThermoFisher |
s53947 |
Silencer select PKMYT1 siRNA |
ThermoFisher |
s194986 |
Silencer select PKMYT1 siRNA |
ThermoFisher |
s194985 |
Silencer select CSNK1G1 siRNA |
ThermoFisher |
s28823 |
Silencer select CSNK1G1 siRNA |
ThermoFisher |
s28822 |
Silencer select WNK3 siRNA |
ThermoFisher |
s35278 |
Silencer select WNK3 siRNA |
ThermoFisher |
s35279 |
Silencer select POMK siRNA |
ThermoFisher |
s534531 |
Silencer select POMK siRNA |
ThermoFisher |
s534532 |
Silencer select NEK7 siRNA |
ThermoFisher |
s44315 |
Silencer select NEK7 siRNA |
ThermoFisher |
s44316 |
Silencer select NEK6 siRNA |
ThermoFisher |
s21184 |
Silencer select NEK6 siRNA |
ThermoFisher |
s21185 |
Silencer select RIOK2 siRNA |
ThermoFisher |
s622 |
Silencer select SCYL3 siRNA |
ThermoFisher |
s32780 |
Silencer select SCYL3 siRNA |
ThermoFisher |
s32778 |
Silencer select NEK9 siRNA |
ThermoFisher |
s40772 |
Silencer select NEK9 siRNA |
ThermoFisher |
s40771 |
siRNA Positive control: Silencer Cy3-labeled GAPDH siRNA |
ThermoFisher |
Catalog #: AM4649 |
siRNA Negative control: Silencer Select Negative Control No. 2 siRNA |
ThermoFisher |
Catalog #: 4390846 |
|
Recombinant DNA |
|
hORFeome V5.1 |
Horizon Discovery/ Dharmacon |
Open Biosystem |
hORFeome V8.1 |
Horizon Discovery/ Dharmacon |
The CCSB ORFeome Collection |
pTOSH-GW-FRT-HA-Strep |
Glatter et al., 2009 |
N/A |
pOG44 Flp recombinase expression vector |
Invitrogen |
V600520 |
Kinome Constructs |
Varjosalo et al., 2008 |
N/A |
|
Software and Algorithms |
|
Cytoscape 3.6.0 |
Kohl et al., 2011 |
https://www.cytoscape.org/ |
X!Tandem |
Craig & Beavis, 2004 |
https://www.thegpm.org/tandem/ |
Abacus |
Fermin et al., 2011 |
http://abacustpp.sourceforge.net/ |
ProteinProphet |
Deutsch et al., 2010 |
Trans Proteomic Pipeline (TPP, v.4.6.0) |
R package GOSemSim |
Yu et al., 2010 |
Bioconductor (v. 2.6.2) |
R package RDAVIDWebService |
Fresno and Fernández, 2013 |
Bioconductor |
NetPhorest |
Miller et al., 2008 |
http://netphorest.info |
CellProfiler 2.2.0 |
McQuin et al., 2018 |
https://cellprofiler.org |
MATLAB R2019a |
|
https://www.mathworks.com/ |
CompPASS |
Sowa et al., 2009 |
http://besra.hms.harvard.edu/ipmsmsdbs/cgi-bin/tutorial.cgi |
|
Other |
|
Calculation of co-purification p values |
This paper |
N/A |
Opera Phenix automated spinning-disk confocal microscope at 20x magnification |
Perkin Elmer |
HH14000000 |
Upon acceptance, we will share all images generated for the Manuscript through Mendeley Data |
|
N/A |