Skip to main content
. 2020 Aug 6;79(3):504–520.e9. doi: 10.1016/j.molcel.2020.07.001
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

NEK7 Antibody Abcam ab133514
V5 Antibody Life technologie Europe BV R960-25
Anti-HA Antibody Lucerna Chemie AG HA-11, 901513
secondary anti-rabbit IgG HRP-conjugated antibody Cell Signaling #7074S; RRID:AB_2099233
Alexa Fluor® 488 anti-Vimentin Biolegend #677809; RRID:AB_2650955
Alexa Fluor® 647 anti-Tubulin Beta 3 Biolegend #657406; RRID:AB_2563610
DAPI Sigma Aldrich N/A

Chemicals, Peptides, and Recombinant Proteins

Strep-Tactin Sepharose IBA 2-1201-010
X-Treme Gene 9 DNA Transfection Reagent Roche 06365787001
Hygromycin B Invitrogen 10687010
BlasticidinS Hcl, 50 mg Life Technologies R21001
Biotin Sigma B4501-1G
Doxycycline Hyclate Sigma D9891-5G

Critical Commercial Assays

jetPRIME transfection Reagent Chemie Brunschwig AG 114-15
Lipofectamine RNAiMAX Invitrogen 13778075
Adriamycin Sigma D1515

Deposited Data

Processed Protein-Protein Interaction data This paper Table S2
Raw Mass Spectrometry Data and Peptide Identifications This paper Peptide Atlas: PASS01469 https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_View?identifier=PASS01469.

Experimental Models: Cell Lines

Human: Flp-Ln T-Rex 293 Cell Line Thermo Fisher Scientific (Invitrogen) R78007
Human: A549 Cell Line ATCC ATCC® CCL-185
Human: T-REx-HeLa CCL2 Flp-In cells Thermo Fisher Scientific (Invitrogen) R71407
Human: LN-229 (glioblastoma cell line) ATCC ATCC® CRL-2611
Human: SKOV3 (ovarian cancer cell line) ATCC ATCC® HTB-77

Oligonucleotides

Silencer select GSG2 siRNA ThermoFisher s38320
Silencer select PIM3 siRNA ThermoFisher s53946
Silencer select PIM3 siRNA ThermoFisher s53947
Silencer select PKMYT1 siRNA ThermoFisher s194986
Silencer select PKMYT1 siRNA ThermoFisher s194985
Silencer select CSNK1G1 siRNA ThermoFisher s28823
Silencer select CSNK1G1 siRNA ThermoFisher s28822
Silencer select WNK3 siRNA ThermoFisher s35278
Silencer select WNK3 siRNA ThermoFisher s35279
Silencer select POMK siRNA ThermoFisher s534531
Silencer select POMK siRNA ThermoFisher s534532
Silencer select NEK7 siRNA ThermoFisher s44315
Silencer select NEK7 siRNA ThermoFisher s44316
Silencer select NEK6 siRNA ThermoFisher s21184
Silencer select NEK6 siRNA ThermoFisher s21185
Silencer select RIOK2 siRNA ThermoFisher s622
Silencer select SCYL3 siRNA ThermoFisher s32780
Silencer select SCYL3 siRNA ThermoFisher s32778
Silencer select NEK9 siRNA ThermoFisher s40772
Silencer select NEK9 siRNA ThermoFisher s40771
siRNA Positive control: Silencer Cy3-labeled GAPDH siRNA ThermoFisher Catalog #: AM4649
siRNA Negative control: Silencer Select Negative Control No. 2 siRNA ThermoFisher Catalog #: 4390846

Recombinant DNA

hORFeome V5.1 Horizon Discovery/ Dharmacon Open Biosystem
hORFeome V8.1 Horizon Discovery/ Dharmacon The CCSB ORFeome Collection
pTOSH-GW-FRT-HA-Strep Glatter et al., 2009 N/A
pOG44 Flp recombinase expression vector Invitrogen V600520
Kinome Constructs Varjosalo et al., 2008 N/A

Software and Algorithms

Cytoscape 3.6.0 Kohl et al., 2011 https://www.cytoscape.org/
X!Tandem Craig & Beavis, 2004 https://www.thegpm.org/tandem/
Abacus Fermin et al., 2011 http://abacustpp.sourceforge.net/
ProteinProphet Deutsch et al., 2010 Trans Proteomic Pipeline (TPP, v.4.6.0)
R package GOSemSim Yu et al., 2010 Bioconductor (v. 2.6.2)
R package RDAVIDWebService Fresno and Fernández, 2013 Bioconductor
NetPhorest Miller et al., 2008 http://netphorest.info
CellProfiler 2.2.0 McQuin et al., 2018 https://cellprofiler.org
MATLAB R2019a https://www.mathworks.com/
CompPASS Sowa et al., 2009 http://besra.hms.harvard.edu/ipmsmsdbs/cgi-bin/tutorial.cgi

Other

Calculation of co-purification p values This paper N/A
Opera Phenix automated spinning-disk confocal microscope at 20x magnification Perkin Elmer HH14000000
Upon acceptance, we will share all images generated for the Manuscript through Mendeley Data N/A