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. Author manuscript; available in PMC: 2020 Aug 14.
Published in final edited form as: Nat Protoc. 2020 Feb 12;15(3):750–772. doi: 10.1038/s41596-019-0247-2

Fig. 7 |. Processing CellTag data.

Fig. 7 |

Flowchart of the steps required for alignment of raw sequence data to quantify CellTag UMIs and generate a transcriptome digital expression matrix (part 1). Flowchart of the steps involved in data processing using CellTagR package to call clones and reconstruct lineages (part 2).