Table 4.
Small RNAs complementary to the RNAi-5x insert in libraries of control, dsRNA, and dsDNA treatments, after 24 and 48 h incubation, with a minimum read count of 10 in at least one library.
sRNA | Gene | sRNA sequence | Length | Control 24 h |
Control 48 h |
dsRNA 24 h |
dsRNA 48 h |
dsDNA 24 h |
dsDNA 48 h |
---|---|---|---|---|---|---|---|---|---|
151,424 | aflep | UGUUUCUGGUGGCAUUGGACC | 21 | 0 | 0 | 0 | 0 | 4 | 10 |
112,565 | aflep | UCACGGACGAAUCCCCUGCAUC | 22 | 0 | 0 | 0 | 0 | 6 | 11 |
98,716 | aflep | UCUUGUCAUCUCUACAGCCAUUC | 23 | 0 | 0 | 0 | 0 | 8 | 12 |
101,788 | aflep | GCAUUGGACCGUCUUGUCAUC | 21 | 0 | 0 | 0 | 0 | 6 | 13 |
65,440 | aflep | UCUUGUCAUCUCUACAGCCAUU | 22 | 0 | 0 | 0 | 0 | 15 | 15 |
38,032 | aflep | GUCUUGUCAUCUCUACAGCCA | 21 | 0 | 0 | 0 | 0 | 18 | 38 |
38,321 | aflep | ACCGUCUUGUCAUCUCUACAGCCA | 24 | 0 | 0 | 0 | 2 | 17 | 37 |
106,715 | aflep | UCCCCAGAUCACGGACGAAUCCCC | 24 | 0 | 0 | 4 | 12 | 1 | 1 |
113,005 | aflep | CCCCAGAUCACGGACGAAUCCC | 22 | 0 | 0 | 0 | 1 | 6 | 11 |
128,820 | aflep | CCCAGAUCACGGACGAAUCCCC | 22 | 0 | 0 | 1 | 1 | 4 | 11 |
61,031 | aflep | CCCAGAUCACGGACGAAUCCC | 21 | 0 | 0 | 1 | 2 | 14 | 18 |
61,878 | aflep | GGACGAAUCCCCUGCAUCUACG | 22 | 0 | 0 | 1 | 0 | 10 | 23 |
182,477 | pksA | AGGCCACGGUAGGGAGG | 17 | 0 | 0 | 1 | 11 | 0 | 0 |
143,562 | pes1 | ACUCUGGAAUUGACAUUUCGCGUA | 24 | 0 | 0 | 0 | 0 | 4 | 10 |