KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Bacterial and Virus Strains | ||
| Nanosynbacter lyticus strain TM7x | (He et al., 2015) | TM7x |
| Biological Samples | ||
| Human saliva | This study | N/A |
| Human tongue-surface swabs | This study | N/A |
| Chemicals, Peptides, and Recombinant Proteins | ||
| SlowFade Gold antifade mountant | Thermo Fisher Scientific | Cat#: S36936 |
| Syto-9 Wheat germ agglutinin, Alexa Fluor 488 conjugate | Thermo Fisher Scientific | Cat#: W11261 |
| Deposited Data | ||
| Ca. Nanosynsacchari sp. TM7_ANC_38.39_G1_1 | This paper | GenBank: PQNZ00000000 |
| Ca. Nanosynsacchari sp. TM7_G1_3_12Alb | This paper | GenBank: PQOA00000000 |
| Ca. Nanosyncoccus alces TM7_G3_2_Rum_HOT_351B | This paper | GenBank: PRLM00000000 |
| Ca. Nanosyncoccus nanoralicus TM7_KMM_G3_1_HOT_351 | This paper | GenBank: PRLL00000000 |
| Ca. Nanoperiomorbus periodonticus TM7_EAM_G5_1_HOT_356 | This paper | GenBank: PRLO00000000 |
| Ca. Nanoperiomorbus periodonticus TM7_EAM_G5_2_HOT_356 | This paper | GenBank: PRLN00000000 |
| Ca. Nanogingivalis gingivitcus TM7_CMJM_G6_1_HOT_870 | This paper | GenBank: PRLK00000000 |
| Nanosynbacter lyticus strain TM7x HOT_952 | (He et al., 2015) | GenBank: CP007496.1 |
| GWC2 | (Brown et al., 2015) | N/A |
| RAAC3 | (Kantor et al., 2013) | GenBank: CP006915.1 |
| S_aal | (Albertsen et al., 2013) | GenBank: CP005957.1 |
| TM7c | (Marcy et al., 2007) | GenBank: ABBX00000000 |
| TM7_S7 | IMG public release | IMG Id: 2236661026 |
| Oligonucleotides | ||
| G1-specific Cy5-labeled probe: CCTACGCAACTCTTTACGCC | (He et al., 2015) | N/A |
| G3-specific Cy3-labeled probe: ACTTGGCTATTATGCGAGT | This paper | N/A |
| G5-specific Cy3-labeled probe: GCTCTTCGGAGTACACGAGA | This paper | N/A |
| G6-specific Cy3-labeled probe: GCATCGAAAGGTGTGC | This paper | N/A |
| SR1-specific Cy5-labeled probe: TTAACYRGACACCTTGCG | This paper | N/A |
| G3-specific forward primer: ACTTGGCTATTATGCGAGT | This paper | G3-F73 |
| G3-specific reverse primer: GGATACCTTGTTACGAC | This paper | G3-R1469 |
| G5-specific forward primer: GCTCTTCGGAGTACACGAGA | This paper | G5-F47 |
| G5-specific reverse primer: AAATAAATCCGGACGTCGGGTGCTCC | This paper | G5-R1336 |
| G6-specific forward primer: GCATCGAAAGGTGTGC | This paper | G6-F180 |
| G6-specific reverse primer: CCTTGTTACGACTTAAC | This paper | G6-R1469 |
| SR1-specific forward primer: GATGAACGCTAGCGRAAYG | (Camanocha and Dewhirst, 2014) | SR1-AF31-X1 |
| SR1-specific forward primer: CTTAACCCCAGTCACTGATT | (Camanocha and Dewhirst, 2014) | SR1-AF32 |
| Software and Algorithms | ||
| BBDuk | (Bushnell, 2015) | https://sourceforge.net/projects/bbmap/ |
| SPAdes Assembler | (Nurk et al., 2013) | RRID:SCR_000131; https://github.com/ablab/spades |
| CONCOCT | (Alneberg et al., 2014) | https://github.com/BinPro/CONCOCT |
| VizBin | (Laczny et al., 2015) | https://github.com/claczny/VizBin |
| CheckM | (Parks et al., 2015) | http://ecogenomics.github.io/CheckM/ |
| PhyloSift | (Darling et al., 2014) | https://github.com/gjospin/PhyloSift |
| RAxML v8.2.7 | (Stamatakis, 2014) | RRID:SCR_006086; https://cme.h-its.org/exelixis/web/software/raxml/ |
| FigTree v1.2.2 | (Rambaut, 2009) | RRID:SCR_008515; http://tree.bio.ed.ac.uk/software/figtree/ |
| Prokka v | (Seemann, 2014) | RRID:SCR_014732; https://github.com/tseemann/prokka |
| CompareM | (Parks, 2014) | https://github.com/dparks1134/CompareM |
| Roary | (Page et al., 2015) | https://github.com/sanger-pathogens/Roary |
| MCL-edge | (Enright et al., 2002) | https://micans.org/mcl/ |
| GhostKOALA | (Kanehisa et al., 2016) | https://www.kegg.jp/ghostkoala/ |
| EggNOG | (Huerta-Cepas et al., 2016) | RRID:SCR_002456; http://eggnog5.embl.de/ http://eggnog5.embl.de/ |
| ClustVis | (Metsalu et al., 2015; Sievers et al., 2011) | https://biit.cs.ut.ee/clustvis/ |
| SINA aligner | (Pruesse et al., 2012) | RRID:SCR_005067; https://www.arb-silva.de/aligner |
| Geneious v11 | RRID:SCR_010519 | |
| Other | ||
| HOMD 16 s rRNA database v14.5 | (Chen et al., 2010) | http://www.homd.org/?name=seqDownload&type=R |