Table 1.
Transposable elements overlapping with DMRs.
| Total length overlapping with SAM_rep hyper CHH DMRs | Total length in genome | Number of TEs | |||
|---|---|---|---|---|---|
| bp | % | bp | % | ||
| Others | 1,658,885 | 32.006 | 76,372,189 | 20.462 | 164,090 |
| MITE | 1,613,181 | 31.124 | 26,189,831 | 7.017 | 156,462 |
| CACTA, En/Spm | 333,344 | 6.431 | 11,880,018 | 3.183 | 18,055 |
| Ty3-gypsy | 271,641 | 5.241 | 31,876,324 | 8.540 | 24,844 |
| Annotated TEs | 234,481 | 4.524 | 54,427,496 | 14.582 | 16,937 |
| Ty1-copia | 106,136 | 2.048 | 5,170,109 | 1.385 | 8455 |
| SINE | 53,533 | 1.033 | 781,060 | 0.209 | 7587 |
| Mutator (MULE) | 39,017 | 0.753 | 804,829 | 0.216 | 3882 |
| Ac/Ds | 7088 | 0.137 | 328,847 | 0.088 | 1709 |
| Mariner (MLE) | 431 | 0.008 | 72,961 | 0.020 | 247 |
| ping/pong/SNOOPY | 197 | 0.004 | 126,318 | 0.034 | 169 |
| LINE | 148 | 0.003 | 189,264 | 0.051 | 531 |