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. 2020 Aug 1;21:340. doi: 10.1186/s12859-020-03670-8

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 5 — Comparison of the ribosome densities among different amino acids and codons. a Relative ribosome density on each amino acid for the sample of si-eIF5A. b Relative ribosome densities on different codons for the si-eIF5A sample. c The ratio (log2) of ribosome densities for each amino acid in the sample of si-eIF5A over si-Ctrl. d The ratio (log2) of ribosome densities for each codon in the sample of si-eIF5A over si-Ctrl. All the analyses above were based on the 2954 up-regulated transcripts. Ribosome densities were calculated with reads aligned by their P-sites