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. 2020 Aug 17;21:562. doi: 10.1186/s12864-020-06943-x

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — Comparison of FRIK804 and Sakai chromosomes. Alignment of the FRIK804 (outer) and Sakai (inner) chromosome found disruption of synteny by large-scale structural alterations. To evaluate each dissimilarity, the locations of relevant genomic features (prophage, PLE, IS, rRNA and tRNA) were identified. Non-conserved regions (e.g. indel-1 and indel-2) of each chromosome are shaded lighter relative to conserved regions. Evidence of mosaicism in otherwise conserved prophage was evident in several pairs of homologs, including the stx2-prophage. The majority of dissimilarities that distinguished each chromosome were associated with MGE. A 1.15 Mb inversion is denoted by the offset region in FRIK804. Indel-1 was classified as a PLE and indel-2 was not associated with any MGE. Mu-like prophage were integrated at different loci. The locations of rRNA and tRNA regions are denoted by dark green and light green regions, respectively