Table 2.
Designation and chromosomal locations of corresponding prophage and PLE in EHEC strains FRIK804 and Sakai. Prophage and PLE were numerically designated in clockwise order (see Fig. 1). The locations of prophage in Sakai were used to identify and locate most prophage and PLE in FRIK804
| FRIK804 | Sakai | |||||||
|---|---|---|---|---|---|---|---|---|
| Name | Start | End | Length (bp) | Name | Start | End | Length (bp) | Notes |
| Φ804–1 | 300,040 | 310,625 | 10,586 | Sp1 | 300,041 | 310,626 | 10,586 | |
| Φ804–2 | 310,626 | 323,512 | 12,887 | Sp2 | 310,627 | 323,513 | 12,887 | |
| Φ804–3 | 409,092 | 448,271 | 39,180 | Mu-like prophagea | ||||
| Φ804–4 | 929,716 | 968,301 | 38,586 | Sp3 | 891,123 | 929,708 | 38,586 | |
| PLE804–1 | 1,095,506 | 1,152,526 | 57,021 | |||||
| Φ804–5 | 1,256,797 | 1,306,445 | 49,649 | Sp4 | 1,161,091 | 1,210,740 | 49,650 | |
| Φ804–6 | 1,341,717 | 1,403,616 | 61,900 | Sp5 | 1,246,012 | 1,308,719 | 62,708 | stx2-prophageb |
| PLE804–2 | 1,465,380 | 1,552,938 | 87,559 | SpLE1 | 1,370,456 | 1,456,704 | 86,249 | |
| Φ804–7 | 1,637,715 | 1,679,972 | 42,258 | Sp6 | 1,541,470 | 1,589,892 | 48,423 | Inversion terminus |
| Φ804–8 | 1,733,959 | 1,755,078 | 21,120 | Sp7 | 1,594,570 | 1,610,032 | 15,463 | |
| Φ804–9 | 2,097,886 | 2,142,115 | 44,230 | Sp8 | 1,618,153 | 1,665,049 | 46,897 | Indel-4 |
| Φ804–10 | 2,142,116 | 2,187,895 | 45,780 | Sp9 | 1,757,506 | 1,815,680 | 58,175 | Indel-4 |
| Φ804–11 | 2,366,081 | 2,417,801 | 51,721 | Sp10 | 1,921,414 | 1,972,525 | 51,112 | |
| Φ804–12 | 2,523,534 | 2,583,605 | 60,072 | Sp11 | 2,158,174 | 2,203,951 | 45,778 | |
| Φ804–13 | 2,675,768 | 2,722,663 | 46,896 | Sp12 | 2,203,952 | 2,250,093 | 46,142 | |
| Φ804–14 | 2,730,784 | 2,746,246 | 15,463 | Sp13 | 2,592,901 | 2,614,020 | 21,120 | |
| Φ804–15 | 2,750,924 | 2,801,116 | 50,193 | Sp14 | 2,668,007 | 2,712,035 | 44,029 | Inversion terminus |
| PLE804–3 | 2,828,472 | 2,843,243 | 14,772 | SpLE2 | 2,738,079 | 2,751,537 | 13,459 | |
| Φ804–16 | 2,987,650 | 3,036,836 | 49,187 | Sp15 | 2,895,926 | 2,943,804 | 47,879 | stx1-prophagec |
| Φ804–17 | 3,287,328 | 3,295,878 | 8551 | Sp16 | 3,192,983 | 3,201,533 | 8551 | |
| Φ804–18 | 3,570,310 | 3,594,556 | 24,247 | Sp17 | 3,475,965 | 3,500,163 | 24,199 | |
| PLE804–4 | 3,946,431 | 3,969,884 | 23,454 | SpLE3 | 3,852,036 | 3,875,489 | 23,454 | |
| PLE804–5 | 4,675,258 | 4,718,713 | 43,456 | SpLE4 | 4,580,864 | 4,624,313 | 43,450 | |
| Sp18 | 5,040,843 | 5,079,601 | 38,759 | Mu-like prophagea | ||||
| PLE804–6 | 5,402,757 | 5,412,991 | 10,235 | SpLE5 | 5,347,085 | 5,357,319 | 10,235 | |
| PLE804–7 | 5,413,043 | 5,447,190 | 34,148 | SpLE6 | 5,357,371 | 5,391,518 | 34,148 | |
aThe Mu-like prophage is capable of transposition
bFunctional phage
cDoes not produce functional phage