Table 2.
Comparison between measured overall KDobs and the calculated macroscopic KDkin from kinetic scheme
KDkin, nM | KDobs, nM | ||
WT |
KDbind = 25 ± 4 μM |
27 ± 9 | 26 ± 4 |
Keqconf = (11 ± 3) × 10−4 | |||
F317L |
KDbind = 25 ± 4 μM |
42 ± 9 | 50 ± 10 |
Keqconf = (19 ± 2) × 10−4 | |||
G250E |
KDbind = 25 ± 2 μM |
88 ± 26 | 78 ± 12 |
Keqconf = (46 ± 11) × 10−4 | |||
Y253F |
KDbind = 21 ± 3 μM |
53 ± 12 | 54 ± 4 |
Keqconf = (26 ± 5) × 10−4 |
Comparison of the overall KD calculated from kinetic data (KDkin) with the experimentally measured macroscopic KD (KDobs). Kinetic data are used to calculate individual equilibrium constants for binding (KD,bind) and the induced-fit step (Keqconf). The overall, kinetic KDkin is calculated according to and can be compared to the macroscopic, experimentally determined value, KDobs (Fig. 2A) to validate the binding scheme. WT, wild type.