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. Author manuscript; available in PMC: 2022 May 1.
Published in final edited form as: Methods. 2019 Oct 28;189:44–53. doi: 10.1016/j.ymeth.2019.10.012

Table 1.

The most related tissues and cell lines for two datasets (GSE104481 and GSE106563)

Dataset Histone mark Query Most related tissue/cell line Lineage group PCC*
GSE104481 H3K27ac GSE104481_R1$ GSE104481_R2 Epithelial 0.9591
A549 EtOH 0.02pct lung carcinoma cell line ENCODE 0.8323
HeLa-S3 cervical carcinoma cell line ENCODE 0.8301
K562 leukemia cell line ENCODE 0.7237
GSE104481_R2 GSE104481_R1 Epithelial 0.9591
A549 EtOH 0.02pct lung carcinoma cell line ENCODE 0.8969
HeLa-S3 cervical carcinoma cell line ENCODE 0.8300
K562 leukemia cell line ENCODE 0.7052
H3K4me3 GSE104481_R1 GSE104481_R2 Epithelial 0.9982
Foreskin melanocyte primary cells skin03 Epithelial 0.8662
Foreskin melanocyte primary cells skin01 Epithelial 0.8618
Foreskin keratinocyte primary cells skin02 Epithelial 0.8556
GSE104481_R2 GSE104481_R1 Epithelial 0.9982
Foreskin melanocyte primary cells skin01 Epithelial 0.8616
Foreskin melanocyte primary cells skin03 Epithelial 0.8608
Foreskin keratinocyte primary cells skin02 Epithelial 0.8505
GSE106563 H3K27ac GSM2842762_KYSE70 GSM2842764_TE5 NA 0.9702
GSM2842768_TT NA 0.8580
GSM2842760_KYSE140 NA 0.7828
A549 EtOH 0.02pct lung carcinoma cell line ENCODE 0.7134
HeLa-S3 cervical carcinoma cell line ENCODE 0.5832
K562 leukemia cell line ENCODE 0.5249
GSM2842768_TT GSM2842764_TE5_H3K27Ac NA 0.8865
GSM2842760_KYSE140_H3K27Ac NA 0.8686
GSM2842762_KYSE70_H3K27Ac NA 0.8580
A549 EtOH 0.02pct lung carcinoma cell line ENCODE 0.7366
Foreskin Keratinocyte Primary Cells skin03 Epithelial 0.6605
K562 leukemia cell line ENCODE 0.6063
GSM2842764_TE5 GSM2842762_KYSE70_H3K27Ac NA 0.9702
GSM2842768_TT_H3K27Ac NA 0.8865
GSM2842760_KYSE140_H3K27Ac NA 0.8231
A549 EtOH 0.02pct lung carcinoma cell line ENCODE 0.7038
HeLa-S3 cervical carcinoma cell line ENCODE 0.5889
K562 leukemia cell line ENCODE 0.5644
GSM2842760_KYSE140 GSM2842768_TT_H3K27Ac NA 0.8686
GSM2842764_TE5_H3K27Ac NA 0.8231
GSM2842762_KYSE70_H3K27Ac NA 0.7828
A549 EtOH 0.02pct lung carcinoma cell line ENCODE 0.6727
Foreskin Keratinocyte Primary Cells skin03 Epithelial 0.6425
K562 leukemia cell line ENCODE 0.5288
*

PCC: Pearson’s Correlation Coefficient.

$

R: Replicate.