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. 2020 Aug 17;94(17):e00396-20. doi: 10.1128/JVI.00396-20

TABLE 1.

Potential binding peptides

Namea Position Sequence Scoreb Refoldingc
VP60-1 542–550 TLIDLTELI 0.52206 +
VP60-2 505–513 ALMPGQFFV 0.59905 +
VP60-3 259–267 GQIVGLQPV 0.54241
VP60-4 81–89 SVADAPGSI 0.46156 +
VP60-5 136–44 AVIPPGIEI 0.43602 +
VP60-6 487–495 GSQPLPVTI 0.48336
VP60-7 536–544 GTGASTTLI 0.44076
VP60-8 316–324 WYANAGSAI 0.47207
VP60-9 191–199 VLSVYNNLI 0.51299 +
VP60-10 341–349 FVPFNSPNI 0.44008 +
VP60-11 517–525 TFASGFMEI 0.50784
VP60-12 341–349 GFMEIGLSV 0.46530
VP60-13 412–420 NQNPTGLFV 0.38125
a

All proteins were derived from major capsid protein VP60 of rabbit hemorrhagic disease virus (GenBank accession number DQ205345.1).

bValues were calculated by using http://www.cbs.dtu.dk/services/NetMHCpan/.

c

Peptides that can (+) or cannot (−) help the RLA-A1 heavy chain renature with human β2m.