TABLE 5.
Stable SNPs associated with six traits common across the three seasons.
| Trait | Exonic CDS | Exonic UTR |
Intronic-5 splice_Site |
Intronic | Intergenic | Total |
| ZPR | 4 | 1 | 5 | 10 | ||
| ZBR | 7 | 1 | 13 | 21 | ||
| IPR | – | – | – | – | 1 | 1 |
| IBR | – | – | – | – | – | 0 |
| SPY | 6 | – | – | 11 | 20 | 37 |
| PL | 4 | 1 | 1 | 11 | 6 | 23 |
| NT | – | – | – | – | – | 0 |
| PH | 8 | 1 | – | 12 | 75 | 96 |
| DFF | – | – | – | – | – | 0 |
| Total SNPs | 29 | 2 | 2 | 35 | 120 | 188 |
DFF, Days to 50% flowering; TNT, Total Number of Tillers per plant; SPY, Single Plant Yield(g); ZBR, Zn content in Brown Rice (ppm); IPR, Fe content in Polished Rice (ppm); ZPR, Zn content in Polished Rice (ppm); CDS, coding sequences; UTR, untranslated region.