TABLE 6.

Significant SNPs located in candidate genes associated with ZPR and SPY along with phenotypic variance (PV%).

S No	Gene ID	Chromosome	Marker ID	Genic region	R-square	PV %
ZPR
1	LOC_Os03g47980 (-)	3	C3.27280585	Intronic	0.178590206	17
2	LOC_Os07g47950 (+)	7	C7.28641194	Exonic-CDS	0.24118621	23
		7	C7.28641196	Exonic-CDS	0.24118621
		7	C7.28641209	Exonic-CDS	0.217452607
3	LOC_Os07g48050 (+)	7	C7.28688976	Exonic-CDS	0.197142974	19
SPY
1	LOC_Os01g64960 (+)	1	C1.37698648	Intronic	0.206905872	21
2	LOC_Os01g64890 (+)	1	C1.37665805	Exonic-CDS	0.166038992	17
3	LOC_Os06g30070 (+)	6	C6.17331199	Exonic-CDS	0.183732247	18
4	LOC_Os12g19090 (-)	12	C12.11083190	Intronic	0.254497827	25
5	LOC_Os12g19350 (-)	12	C12.11224184	Intronic	0.247276479	25
6	LOC_Os12g19590 (+)	12	C12.11423711	Intronic	0.186273816	19
7	LOC_Os12g21500 (+)	12	C12.12083507	Intronic	0.247276479	25
8	LOC_Os12g22300 (-)	12	C12.12589709	Intronic	0.247276479	25
9	LOC_Os12g19370 (+)	12	C12.11245053	Intronic	0.247276479	22
		12	C12.11245866	Exonic-CDS	0.185023395
10	LOC_Os12g19890 (-)	12	C12.11588978	Exonic-CDS	0.362240391	36
11	LOC_Os12g20420 (-)	12	C12.11924838	Exonic-CDS	0.244926128	24