Skip to main content
. 2020 Jul 30;21(15):5419. doi: 10.3390/ijms21155419

Table 1.

Information of the plant TPS gene family in D. officinale.

Name Gene ID 1 ORF 2
(bp)		 AA 3
(aa)		 pI 4 Mw 5 (kDa) AI 6 II 7 GRAVY 8 Localization 9
DoTPS1 Dca014928 960 319 6.31 36.82 90.78 48.81 −0.342 Chloroplast a,b,c
DoTPS2 Dca000724 1902 633 6.47 74.02 88.44 43.11 −0.260 Chloroplast a,b,c
DoTPS3 Dca000725 1827 608 5.46 70.52 89.67 41.24 −0.231 Chloroplast a,b,c
DoTPS4 Dca022838 2571 856 7.18 100.05 80.35 47.78 −0.429 Chloroplast a,b,c
DoTPS5 Dca003141 1692 563 5.11 65.84 98.86 42.13 −0.228 Chloroplast a,b/Cytoplasm c
DoTPS6 Dca019411 1521 506 5.13 59.48 93.68 43.71 −0.133 Chloroplast a,b/Cytoplasm c
DoTPS7 Dca003139 1692 563 5.67 65.72 92.49 39.06 −0.266 Chloroplast a,b/Cytoplasm c
DoTPS8 Dca028160 579 192 6.83 22.63 100.62 45.31 −0.121 Chloroplast a/Unknown b/Cytoplasm c
DoTPS9 Dca019412 1665 554 5.03 64.93 92.94 39.76 −0.189 Chloroplast a,b/Cytoplasm c
DoTPS10 Dca007746 1797 598 5.73 69.73 93.61 47.41 −0.242 Chloroplast a,b/Cytoplasm c
DoTPS11 Dca022749 696 231 5.13 27.40 104.20 49.98 −0.045 Chloroplast a,b/Cytoplasm c
DoTPS12 Dca024936 378 125 5.64 14.98 98.32 40.18 −0.326 Chloroplast a/Cytoplasm b,c
DoTPS13 Dca026570 1659 552 5.59 64.94 96.97 38.16 −0.266 Chloroplast a,b,c
DoTPS14 Dca005188 2550 849 6.71 98.69 86.21 46.66 −0.352 Chloroplast a,b,c
DoTPS15 Dca025698 1659 552 5.31 64.82 89.60 44.73 −0.284 Chloroplast a,b,c
DoTPS16 Dca016979 1650 549 5.62 64.23 91.62 36.94 −0.374 Chloroplast a,b/Cytoplasm c
DoTPS17 Dca008309 1653 550 5.42 64.89 97.13 47.01 −0.233 Chloroplast a,b,c
DoTPS18 Dca011215 1674 557 5.36 64.80 95.10 44.24 −0.302 Chloroplast a,b,c
DoTPS19 Dca010855 1446 481 4.94 55.95 110.46 34.63 0.013 Chloroplast a,b,c
DoTPS20 Dca026890 1749 582 5.20 68.07 92.84 33.82 −0.295 Chloroplast a,b,c
DoTPS21 Dca007747 1797 598 5.62 69.60 94.92 48.15 −0.224 Chloroplast a,b/Cytoplasm c
DoTPS22 Dca003142 1692 563 5.24 65.61 95.26 43.73 −0.245 Chloroplast a,b/Cytoplasm c
DoTPS23 Dca011214 1674 557 5.22 65.03 90.36 37.30 −0.331 Chloroplast a,b/Cytoplasm c
DoTPS24 Dca000728 1386 461 6.38 53.78 93.08 38.16 −0.180 Chloroplast a,b/Cytoplasm c
DoTPS25 Dca013782 1794 597 5.31 69.67 94.61 44.76 −0.274 Chloroplast a,b/Cytoplasm c
DoTPS26 Dca026369 1650 549 5.42 64.61 90.73 42.39 −0.438 Chloroplast a,b/Cytoplasm c
DoTPS27 Dca000723 1938 645 5.89 74.89 91.74 48.68 −0.240 Chloroplast a,b/Cytoplasm c
DoTPS28 Dca003295 1863 620 5.91 72.57 92.35 47.89 −0.262 Chloroplast a,b/Cytoplasm c
DoTPS29 Dca018407 1653 550 5.57 64.68 95.89 50.10 −0.251 Chloroplast a,b/Cytoplasm c
DoTPS30 Dca013784 1377 458 5.07 53.35 93.52 38.64 −0.254 Chloroplast a,b
DoTPS31 Dca016966 1089 362 7.07 41.65 99.70 51.56 −0.193 Chloroplast a,b,c
DoTPS32 Dca018946 2433 810 5.75 91.13 88.99 46.05 −0.169 Chloroplast a,b,c
DoTPS33 Dca017971 1536 511 5.57 58.70 97.18 42.66 −0.109 Chloroplast a,b/Cytoplasm c
DoTPS34 Dca020940 1797 598 5.19 69.59 91.52 45.72 −0.280 Chloroplast a,b,c

1 Gene ID, it is annotated in D. officinale genome [23]; 2 ORF, open reading frame; 3 AA, amino acid; 4 pI, theoretical isoelectric point; 5 Mw, molecular weight; 6 AI, aliphatic index; 7 II, instability index; 8 GRAVY, grand average of hydrophobicity; 9 Localization is predicted by Plant-mPLoc [27] (Table S1, http://www.csbio.sjtu.edu.cn/bioinf/plant-multi/), AtSubP [26] (Table S2, http://bioinfo3.noble.org/AtSubP/), and pLoc-mPlant [28] (Table S3, http://www.jci-bioinfo.cn/pLoc-mPlant/) tools. a, b, c indicates the result of Plant-mPLoc, AtSubP, and pLoc-mPlant, respectively.