. 2020 Jul 22;21(15):5196. doi: 10.3390/ijms21155196

Table A3.

Identification of the phage receptor in Salmonella and Cronobacter. For both, we report the position on the contig (contig, from, to, length), the corresponding gene product according to the RAST annotation (product RAST) and the protein gene product (peg); for the genes involved in the O-antigen production, we also report the gene name and product according to the references [22,23]. Reads from S394 mutant mapped on S. Muenster S394 wt. Coverage < 5 reads, on contigs longer than 100,000 bp. In bold, the ORFs coding for prophages, fimbriae and O-antigen.

Salmonella Contig	From	To	Lenght	Product RAST	peg	Annotation According to [23]
contig_8	1973	2907	135	putative glycosyltransferase
	21,824	21,843	20	Cyd operon protein YbgE
	48,887	50,327	1441	hypothetical protein; put. phosphatase
	70,525	70,574	50	Leucine rich repeat protein
	142,368	167,895	25,528	whole prophage
	224,361	224,381	21	DNA translocase FtsK
	240,568	240,592	25	putative secreted protein
	283,864	289,665	5802	six phage proteins and three hypothetical proteins
	290,855	293,458	2604	SopE, invertase and hypothetical protein
contig_16	1	8072	8072	Alpha-fimbriae chaperone protein; Alpha-fimbriae major subunit; Alpha-fimbriae usher protein; Alpha-fimbriae tip adhesin; Transcriptional regulator; TioA protein; hypothetical protein
contig_16	114,052	114,144	93	hypothetical protein
contig_22	1	2821	2821	Lysozyme family,: hypothetical protein, phage tail fiber-like; Cytolethal distending toxin subunit B, DNase I-like; transposase
	33,364	33,900	537	hypothetical protein
	44,450	53,815	9366	Putative oxidoreductase YdjL; Uncharacterized MFS-type transporter YdjK; Hypothetical zinc-type alcohol dehydrogenase-like protein YdjJ; Putative aldolase YdjI; Uncharacterized sugar kinase YdjH; Uncharacterized oxidoreductase YdjG; Uncharacterized transcriptional regulator YdjF, DeoR family; Uncharacterized transcriptional regulator YdjF, DeoR family; Uncharacterized MFS-type transporter YdjE
	219,027	222,993	3967	Cystathionine beta-lyase MalY Maltose regulon modulator; PTS system, maltose and glucose-specific IIC component / PTS system, maltose and glucose-specific IIB component; Maltose regulon regulatory protein MalI
	233,873	234,200	328	Outer membrane porin OmpN
	311,545	314,813	3269	hypothetical protein; transcription regulator LysR; putative oxidoreductase
	326,896	329,224	2329	two hypotheetical proteins, hemolysin
contig_21	24,376	24,427	52	Uncharacterized metal-dependent hydrolase STM4445
	80,677	81,930	1254	Uncharacterized protein YjfY; probable integral membrane protein Cj0014c
	94,979	95,102	124	hypothetical protein
	145,365	156,714	11,350	SdiA-regulated putative outer membrane protein SrgB; hypothetical proteins; K88 minor fimbrial subunit faeH precursor; Putative fimbrial chaperone protein; major pilu subunit operon regulatory protein PapB; transposase
contig_13	50,450	56,299	5850	PTS system, mannitol-specific cryptic IIA component; PTS system, mannitol-specific IIC component / PTS system, mannitol-specific IIB component; Uncharacterized protein YggP; Fructose-1,6-bisphosphatase, GlpX type; Fumarate hydratase FumE; Uncharacterized sugar kinase YggC; Uncharacterized sugar kinase YggC
contig_13	103,105	104,327	1223	hypothetical protein
contig_23	63,088	63,268	181	Trp transport protein
	71,589	71,716	128	ribosome binding factor A
	78,672	78,833	162	hypothetical protein
	117,795	118,155	361	putative uncharacterized protein
	137,502	137,555	54	oxaloacetate decarboxylase
contig_9	4796	8158	3363	DNA-cytosine methyltransferase; hypothetical protein
	28,620	29,048	429	uncharacterized protein
	31,367	34,321	2955	uncharacterized protein; Thr efflux proteins; Transcriptional regulator, AraC family
	73,912	74,614	703	hypothetical protein
	161,073	161,244	172	non-specific ribonucleoside hydrolase
contig_26	88,225	88,395	171	uncharacterized protein YacH
	107,706	108,146	441	hypothetical protein
	112,522	112,618	97	Putative PTS system IIA component YadI
	116,430	124,419	7990	Uncharacterized fimbrial-like protein YadC; Uncharacterized fimbrial-like protein YadK; Uncharacterized fimbrial-like protein YadL; Uncharacterized fimbrial-like protein YadM; Outer membrane usher protein HtrE; Fimbria adhesin EcpD; Uncharacterized fimbrial-like protein YadN
	150,755	154,023	3269	hypothetical protein
	170,664	170,916	253	Outer membrane protein assembly factor YaeT
contig_3	12,533	12,618	86	hypothetical protein
	41,089	41,277	189	hypothetical protein
	224,967	227,978	3012	putative surface-exposed virulence protein
contig_4	59,736	71,228	11493	Retron-type RNA-directed DNA polymerase; Zinc binding domain / DNA primase; Phage immunity repressor protein; Phage capsid and scaffold protein; hypothetical protein; integrase
contig_17	137,188	138,244	1057	hypothetical protein
contig_6	63,478	63,745	268	Chemotaxis protein CheV
	258,121	264,643	6523	Uncharacterized lipoprotein YfgH; Uncharacterized protein YfgI; hypothetical proteins
	273,517	274,791	1275	AIDA autotransporter like protein
contig_5	1	10,028	10,028	CRISPR associated proteins; hypothetical proteins
	57,618	57,917	300	Type III secretion host injection protein (YopB); Cell invasion protein Salmonella Invasion protein D
	171,596	173,193	1598	hypothetical protein
	181,722	185,551	3830	hypothetical proteins
contig_11	33,872	34,492	621	lipase
contig_20+39	5049	5708	660	O antigen biosynthesis rhamnosyltransferase RfbN	3247	wbaN, Rhamnosyl transferase
	5712	6797	1986	Glycosyltransfearse	3248	wbaO, Mannosyl transferase
	6790	7968	1179	hypothetical protein	3249	wzy_D2,E, O-antigen polymerase
	8157	9485	1329	FIG01200878: hypothetical protein	3250	wzx, O-antigen flippase
	9835	10,365	531	dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	3251	rfbC (rmlC), dTDP-4-dehydrorhamnose 3,5-epimerase
	76,420	77,442	1023	Uncharacterized fimbrial-like protein YehA
	77,458	79,944	2487	Outer membrane usher protein YehB
	79,973	80,653	681	Probable fimbrial chaperone YehC
	80,715	81,248	534	Uncharacterized fimbrial-like protein YehD