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. 2020 Jul 22;21(15):5196. doi: 10.3390/ijms21155196

Table A4.

Identification of the phage receptor in Salmonella and Cronobacter. For both, we report the position on the contig (contig, from, to, length), the corresponding gene product according to the RAST annotation (product RAST) and the protein gene product (peg); for the genes involved in the O-antigen production, we also report the gene name and product according to the references [22,23]. Reads from C. sakazakii CS1 mutant R3 mapped on CS1 wt. Coverage < 5 reads, on contigs longer than 100,000 bp. In bold the ORF coding for the O-antigen and the capsule.

Cronobacter Contig From To Lenght Product RAST peg Annotation According to [22]
contig_4 62,745 62,747 2 Glycerate kinase (EC 2.7.1.31)
365,022 365,071 47 hypothetical protein
458,333 458,453 121 hypothetical protein
contig_1 6458 6463 6 VgrG protein
7278 8409 1132 hypothetical protein-non coding-hypothetical protein
8514 8723 210 hypothetical protein
9886 9899 14 hypothetical protein
10,096 10,191 96 hypothetical protein
10,213 10,223 11 hypothetical protein
105,767 105,932 166 hypothetical protein
105,999 106,098 100 hypothetical protein
106,147 106,170 24 hypothetical protein
291,675 291,697 23 hypothetical protein
299,568 299,652 85 EF hand domain protein
299,670 299,754 85 EF hand domain protein
299,790 299,826 37 hypothetical protein
668,809 668,870 62 hypothetical protein
680,943 681,141 199 hypothetical protein
681,144 681,614 471 hypothetical protein
747,237 747,243 7 hypothetical protein
747,498 747,987 490 hypothetical protein 744 wehL, glycosyltransferase
748,471 751,728 3257 hypothetical protein 745 wehK, glycosyltransferase
hypothetical protein 746 wehJ, glycosyl transferase
hypothetical protein 747 wzy, O-antigen polymerase
predicted glycosyl transferase 748 wdaN, glycosyl transferase
Glycosyl transferase, group 2 family protein 749
751,992 753,948 1956 Glycosyl transferase, group 2 family protein 749
Membrane protein involved in the export of O- antigen, teichoic acid lipoteichoic acids 750 wzx, O antigen flippase
dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) 751 rmlC, dTDP-6-deoxy-D-glucose-3,5 epimerase
contig_8 188 299 112 hypothetical protein
373 391 19 hypothetical protein
1696 1850 155 Retron-type RNA-directed DNA polymerase
1908 2235 328 Retron-type RNA-directed DNA polymerase
12,403 12,456 54 hypothetical protein
65,487 65,654 168 hypothetical protein
193,244 193,398 155 hypothetical protein
434,360 434,493 134 hypothetical protein
519,306 519,588 283 hypothetical protein
520,419 520,724 306 hypothetical protein
520,975 521,362 388 hypothetical protein
contig_2 48,377 49,964 1588 hypothetical protein
50,769 51,114 346 hypothetical protein
140,889 140,939 51 Exopolysaccharide phosphotransferase SCO6023 (EC 2.7.-.-) 1735
141,013 141,080 68 Exopolysaccharide phosphotransferase SCO6023 (EC 2.7.-.-) 1735
141,860 142,540 681 Beta-1,3-glucosyltransferase 1736
143,653 143,805 153 hypothetical protein 1737
144,395 145,226 832 Capsular polysaccharide export system protein KpsS 1738
contig_9 108,824 109,127 304 hypothetical protein
contig_11 1490 1496 7 hypothetical protein
2890 2897 8 hypothetical protein
2909 2985 77 hypothetical protein
9254 9439 186 acyltransferase family protein
contig_3 41,695 41,885 191 hypothetical protein
191,953 191,971 19 hypothetical protein
contig_7 41,705 41,715 11 Transcriptional regulator, LysR family
41,759 41,804 46 Transcriptional regulator, LysR family
48,859 48,914 56 hypothetical protein
50,602 50,766 165 hypothetical protein
50,808 50,928 121 hypothetical protein
99,427 99,516 90 hypothetical protein
125,451 126,002 552 hypothetical protein