Table A4.
Identification of the phage receptor in Salmonella and Cronobacter. For both, we report the position on the contig (contig, from, to, length), the corresponding gene product according to the RAST annotation (product RAST) and the protein gene product (peg); for the genes involved in the O-antigen production, we also report the gene name and product according to the references [22,23]. Reads from C. sakazakii CS1 mutant R3 mapped on CS1 wt. Coverage < 5 reads, on contigs longer than 100,000 bp. In bold the ORF coding for the O-antigen and the capsule.
| Cronobacter Contig | From | To | Lenght | Product RAST | peg | Annotation According to [22] |
|---|---|---|---|---|---|---|
| contig_4 | 62,745 | 62,747 | 2 | Glycerate kinase (EC 2.7.1.31) | ||
| 365,022 | 365,071 | 47 | hypothetical protein | |||
| 458,333 | 458,453 | 121 | hypothetical protein | |||
| contig_1 | 6458 | 6463 | 6 | VgrG protein | ||
| 7278 | 8409 | 1132 | hypothetical protein-non coding-hypothetical protein | |||
| 8514 | 8723 | 210 | hypothetical protein | |||
| 9886 | 9899 | 14 | hypothetical protein | |||
| 10,096 | 10,191 | 96 | hypothetical protein | |||
| 10,213 | 10,223 | 11 | hypothetical protein | |||
| 105,767 | 105,932 | 166 | hypothetical protein | |||
| 105,999 | 106,098 | 100 | hypothetical protein | |||
| 106,147 | 106,170 | 24 | hypothetical protein | |||
| 291,675 | 291,697 | 23 | hypothetical protein | |||
| 299,568 | 299,652 | 85 | EF hand domain protein | |||
| 299,670 | 299,754 | 85 | EF hand domain protein | |||
| 299,790 | 299,826 | 37 | hypothetical protein | |||
| 668,809 | 668,870 | 62 | hypothetical protein | |||
| 680,943 | 681,141 | 199 | hypothetical protein | |||
| 681,144 | 681,614 | 471 | hypothetical protein | |||
| 747,237 | 747,243 | 7 | hypothetical protein | |||
| 747,498 | 747,987 | 490 | hypothetical protein | 744 | wehL, glycosyltransferase | |
| 748,471 | 751,728 | 3257 | hypothetical protein | 745 | wehK, glycosyltransferase | |
| hypothetical protein | 746 | wehJ, glycosyl transferase | ||||
| hypothetical protein | 747 | wzy, O-antigen polymerase | ||||
| predicted glycosyl transferase | 748 | wdaN, glycosyl transferase | ||||
| Glycosyl transferase, group 2 family protein | 749 | |||||
| 751,992 | 753,948 | 1956 | Glycosyl transferase, group 2 family protein | 749 | ||
| Membrane protein involved in the export of O- antigen, teichoic acid lipoteichoic acids | 750 | wzx, O antigen flippase | ||||
| dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 751 | rmlC, dTDP-6-deoxy-D-glucose-3,5 epimerase | ||||
| contig_8 | 188 | 299 | 112 | hypothetical protein | ||
| 373 | 391 | 19 | hypothetical protein | |||
| 1696 | 1850 | 155 | Retron-type RNA-directed DNA polymerase | |||
| 1908 | 2235 | 328 | Retron-type RNA-directed DNA polymerase | |||
| 12,403 | 12,456 | 54 | hypothetical protein | |||
| 65,487 | 65,654 | 168 | hypothetical protein | |||
| 193,244 | 193,398 | 155 | hypothetical protein | |||
| 434,360 | 434,493 | 134 | hypothetical protein | |||
| 519,306 | 519,588 | 283 | hypothetical protein | |||
| 520,419 | 520,724 | 306 | hypothetical protein | |||
| 520,975 | 521,362 | 388 | hypothetical protein | |||
| contig_2 | 48,377 | 49,964 | 1588 | hypothetical protein | ||
| 50,769 | 51,114 | 346 | hypothetical protein | |||
| 140,889 | 140,939 | 51 | Exopolysaccharide phosphotransferase SCO6023 (EC 2.7.-.-) | 1735 | ||
| 141,013 | 141,080 | 68 | Exopolysaccharide phosphotransferase SCO6023 (EC 2.7.-.-) | 1735 | ||
| 141,860 | 142,540 | 681 | Beta-1,3-glucosyltransferase | 1736 | ||
| 143,653 | 143,805 | 153 | hypothetical protein | 1737 | ||
| 144,395 | 145,226 | 832 | Capsular polysaccharide export system protein KpsS | 1738 | ||
| contig_9 | 108,824 | 109,127 | 304 | hypothetical protein | ||
| contig_11 | 1490 | 1496 | 7 | hypothetical protein | ||
| 2890 | 2897 | 8 | hypothetical protein | |||
| 2909 | 2985 | 77 | hypothetical protein | |||
| 9254 | 9439 | 186 | acyltransferase family protein | |||
| contig_3 | 41,695 | 41,885 | 191 | hypothetical protein | ||
| 191,953 | 191,971 | 19 | hypothetical protein | |||
| contig_7 | 41,705 | 41,715 | 11 | Transcriptional regulator, LysR family | ||
| 41,759 | 41,804 | 46 | Transcriptional regulator, LysR family | |||
| 48,859 | 48,914 | 56 | hypothetical protein | |||
| 50,602 | 50,766 | 165 | hypothetical protein | |||
| 50,808 | 50,928 | 121 | hypothetical protein | |||
| 99,427 | 99,516 | 90 | hypothetical protein | |||
| 125,451 | 126,002 | 552 | hypothetical protein |