| DUB | Deubiquitinating enzyme |
| RP | Regulatory particle |
| CP | Core particle |
| UBL | Ubiquitin-like |
| UbAMC | Ubiquitin amidomethylcoumarin |
| ULD | UCH37-like |
| ASCL | Active site crossover loop |
| DEUBAD | Deubiquitinase adaptor |
| Ubal | Ubiquitin aldehyde |
| UbVS | Ubiquitin vinyl sulfone |
| Smo | Smoothened |
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