Table 1.
Gene element |
CDK2NA gene variant (protein variant) | Families by Region | ||||||
---|---|---|---|---|---|---|---|---|
p16INK4A | p14ARF | Australia | UK | |||||
Nucleotide change1 | Effect on protein |
Nucleotide change1 | Effect on protein2 |
Sydney | Melbourne | Brisbane | Leeds | |
5' UTR | c.−34G>T | r.−34_−32>p.M1 | _ | 1 | 1 | |||
Exon 1α | c.9_32del24 | p.A4_10Edel7 | _ | 1 | ||||
c.32_33ins9_32 | p.M1_S8dup | _ | 1 | 3 | ||||
c.52_57dup6 | p.20T_21Adup | _ | 1 | 1 | ||||
c.68G>A | p.G23D | _ | 1 | |||||
c.95T>C | p.L32P | _ | 1 | |||||
c.104G>C | p.G35A | _ | 1 | |||||
Exon 1β | _ | c.81C>G | p.I27M | 1 | ||||
_ | c.193G>A | p.G65S | 1 | |||||
_ | c.193G>C | p.G65R | 1 | |||||
Exon 2 | c.159G>C | p.M53I | c.202G>C | p.D68H | 4 | |||
c.188T>C | p.L63P | c.231T>C | p.A77A (silent) | 1 | ||||
c.194T>C | p.L65P | c.237T>C | p.A79A (silent) | 1 | ||||
c.202_203GC>TT | p.A68L | c.245_246GC>TT | p.R82L | 1 | ||||
c.206A>G | p.E69G | c.249A>G | p.G83G (silent) | 1 | 2 | |||
c.212A>C | p.N71T | c.255A>C | p.Q85H | 1 | ||||
c.228_246del19 | p.L77TfsX62 | c.271_289del19 | p.R90VfsX75 | 2 | ||||
c.251A>C | p.D84A | c.294A>C | p.R84R (silent) | 1 | ||||
c.331G>A | p.G111S | c.374G>A | p.G125E | 1 | ||||
Intron 2 | c.458-105A>G | altered splicing | _ | altered splicing | 1 | 4 | ||
Total | 5 | 4 | 4 | 22 |
Nucleotides are numbered from the first A of the initiation codon of p16INK4A in the standard nomenclature for mutations employed.[23]
Synonymous variants are presumed ‘silent’.