Table 1:
Genome annotation statistics for the Arctia plantaginis trio-binned assembly
| Statistic | iArcPla.TrioW (paternal) | iArcPla.TrioY (maternal) |
|---|---|---|
| Total genome size (bp) | 584,621,344 | 577,993,050 |
| Repetitive sequences (bp) | 239,949,688 | 247,356,128 |
| Masked repeats (%) | 41.04 | 42.80 |
| Mapped RNA-seq reads (n) | 599,065,138 | 590,780,528 |
| Mapped RNA-seq reads (%) | 366,732 | 94.13 |
| Protein-coding genes (n) | 19,899 | 18,894 |
| Mean gene length (bp) | 5,966 | 5,951 |
| BUSCO Completeness (%; n: 1,658) | 98.00 | 95.90 |
| Repeat elements (n) | ||
| Total | 1,220,592 | 1,232,654 |
| DNA Transposons | 366,732 | 372,834 |
| LTRs | 127,169 | 139,770 |
| LINEs | 425,833 | 433,388 |
| SINEs | 43,022 | 71,790 |
| Unclassified | 257,836 | 214,872 |
Statistics generated using the BRAKER2 pipeline, for the paternal (iArcPla.TrioW) and maternal (iArcPla.TrioY) haplotype assemblies. LINE: long interspersed terminal repeat; LTR: long terminal repeat; SINE: short interspersed nuclear element.