TABLE 4.

Performances of various tools on E. coli genome sequencing data.

Dataset	Tool	Deletion rate (%)	Insertion rate (%)	Mismatch rate (%)	Error rate (%)
E. coli 100 reads	Albacore (default)	6.66	5.14	7.74	19.55
	Chiron	5.48	3.93	6.70	16.64 (−3.44)
	Scrappie events	8.34	3.82	4.68	16.84 (−2.71)
	Scrappie rawa	6.61	4.27	4.53	15.42 (−4.13)
	NanoReviser (low coverage)	5.82	3.88	4.60	14.30 (−5.25)
	NanoReviser (local)	5.37	4.74	4.94	15.05 (−4.50)
	NanoReviser	5.62	3.91	4.69	14.22(−5.33)

^aScrappie raw only generate 90 reads. The number in bold denotes the lowest error rate in the corresponding columns.