TABLE 5.

Performances of various tools on human NA12878 genome sequencing data.

Dataset	Tool	Deletion rate (%)	Insertion rate (%)	Mismatch rate (%)	Error rate (%)
NA12878 Chr. 1-21 and Chr. X Total 2,200 reads	Albacore (default)	12.32	4.53	5.88	22.74
	DeepNano	11.67	5.15	5.53	22.36 (−0.38)
	Chiron	9.46	4.21	4.47	18.13 (−4.61)
	Scrappie eventsa	10.43	4.39	4.09	18.89 (−3.84)
	Scrappie rawb	9.15	4.67	4.22	19.01 (−3.73)
	NanoReviser (low coverage)	9.65	4.94	4.38	18.97 (−4.76)
	NanoReviser (local)	8.64	4.81	4.35	17.80 (−4.93)
	NanoReviser	8.84	4.40	3.83	17.07(−5.66)

^aScrappie events could only basecall 2,186 reads, we use the default reads basecalled by Albacore to instead the miss-basecalled 14 reads. ^bScrappie raw could only basecall 1,625 reads, we use the default reads basecalled by Albacore to instead the miss-basecalled 575 reads. The number in bold denotes the lowest error rate in the corresponding columns.