TABLE 7.

Running speeds of various tools used on E. coli data and human data.

Tool	Local PC with only CPU (MacBook)>		HPC with CPU and GPU (Dell R930)
	E. coli	Human	E. coli	Human
Chiron	21 bp/s	21 bp/s	1,428 bp/s	1,526 bp/s
DeepNano	604 bp/s	723 bp/s	1,025 bp/s	1,134 bp/s
Scrappie events	–	–	6,240 bp/s	7,628 bp/s
Scrappie Raw	–	–	5,312 bp/s	6,004 bp/s
NanoReviser	875 bp/s	1,122 bp/s	3,050 bp/s	3,042 bp/s
NanoReviser (local)	887 bp/s	1,089 bp/s	3,036 bp/s	3,094 bp/s
NanoReviser (low coverage)	860 bp/s	1,092 bp/s	3,004 bp/s	3,006 bp/s
NanoReviser (methylation)	849 bp/s	–	2,690 bp/s	–