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. Author manuscript; available in PMC: 2020 Aug 19.
Published in final edited form as: Cell Rep. 2020 Jul 21;32(3):107909. doi: 10.1016/j.celrep.2020.107909

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Flag 1:1,000 Sigma V8137
SPRED1 1:1,000 Cell Signaling 94063
α/β-Tubulin 1:2,000 Cell Signaling 2148
EGFR 1:200 Santa Cruz Biotech 1005, SC-03
Neurofibromin 1:200 Santa Cruz Biotech SC-67
RAS 1:200 Cytoskeleton AESA02
β-Actin 1:10,000 Sigma-Aldrich A5441
Bacterial and Virus Strains
BL21 STAR (DE3) Thermo Fisher C601003
Tni-FNL insect cells FNLCR Tni-FNL
Baculovirus, Bac-to-Bac Thermo Fisher AcMNPV
Retrovirus: pMD2.G Addgene 12259
Retrovirus: gag/pol Addgene 14887
Biological Samples
HEK293T UCSF Cell and Genome Engineering Core CCLZR076
K562 UCSF Cell and Genome Engineering Core CCLZR466
Chemicals, Peptides, and Recombinant Proteins
protease inhibitor (PI) cocktail Sigma-Aldrich P8849, P8340
ANAPOE®-80 Molecular Dimensions APT080 500 ML
PGA-LM Molecular Dimensions MD2-250-108
PEG3350 (50% w/v) Hampton Research HR2-527
DMEM, high glucose Thermo Fisher 11965-084
RPMI 1640 Thermo Fisher 118775-093
FBS Atlanta Biologicals S11550H
Penicillin-Streptomycin Thermo Fisher 15140-122
Opti-MEM Reduced Serum Medium Thermo Fisher 51985091
phosphatase inhibitors Sigma Aldrich P0044, P5726
EGF Thermo Fisher PHG0311
Nuclear and Cytoplasmic Extraction Reagents Thermo Fisher 78835
Lipofectamine 3000 Transfection Reagent Thermo Fisher L3000015
ViralBoost Reagent Alstem VB1000
trypsin Sigma Trypsin Singles T7575
Critical Commercial Assays
RAS Pull-down Activation Assay Biochem Kit Cytoskeleton BK008
Lipofectamine 2000 Transfection Reagent Thermo Fisher 11668019
Deposited Data
Crystal structure of KRAS-NF1-SPRED1 This study PDB:6V65
Crystal structure of KRAS(Q61L)-NF1-SPRED1 This study PDB:6V6F
Experimental Models: Cell Lines
HEK293T UCSF Cell and Genome Engineering Core CCLZR076
K562 UCSF Cell and Genome Engineering Core CCLZR466
Spred1(S105A)-Forward PrimerGGTCTTACGTTTCAAGCTCCTGCTGATGCTAGG Sigma-Aldrich N/A
Spred1(S105A)-Reverse PrimerCCTAGCATCAGCAGGAGCTTGAAACGTAAGACC Sigma-Aldrich N/A
Spred1(S105D)-Forward PrimerGTTTGGTCTTACGTTTCAACATCCTGCTGATGCTAGGGC Sigma-Aldrich N/A
Spred1(S105D)-Reverse PrimerGCCCTAGCATCAGCAGGATGTTGAAACGTAAGACCAAAC Sigma-Aldrich N/A
Spred1(S105E)-Forward PrimerGGTCTTACGTTTCAAGAACCTGCTGATGCTAG Sigma-Aldrich N/A
Spred1(S105E)-Reverse PrimerCTAGCATCAGCAGGTTCTTGAAACGTAAGACC Sigma-Aldrich N/A
Spred1(W31C)-Forward PrimerCTCAAGTGGTGGATGCTTACCACTTGGAGGG Sigma-Aldrich N/A
Spred1(W31C)-Reverse PrimerCCCTCCAAGTGGTAAGCATCCACCACTTGAG Sigma-Aldrich N/A
Spred1(T102R)-Forward PrimerCAAGAAGTTTGGTCTTAGGTTTCAAAGTCCTGCTG Sigma-Aldrich N/A
Spred1(T102R)-Reverse PrimerCAGCAGGACTTTGAAACCTAAGACCAAACTTCTTG Sigma-Aldrich N/A
Recombinant DNA
pDZ2087 (Expresses TEV protease in E. coli) Addgene 92414
pMIG Addgene 9044
pMD2.G Addgene 12259
SPRED1 expression plasmid for cellular assay (Stowe et al., 2012) N/A
Software and Algorithms
XDS (Kabsch, 2010) N/A
Phaser (McCoy et al., 2007) N/A
Phenix (Adams et al., 2010) N/A
COOT (Emsley et al., 2010) N/A
DSSP https://swift.cmbi.umcn.nl/gv/dssp/). N/A
PyMOL Schrödinger, LLC Ver: 2.3.2
SBGrid Consortium (Morin et al., 2013) N/A
PDBSum http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=index.html/ N/A
MicroCal PEAQ-ITC analysis software Malvern N/A
Proteome Discoverer Thermo Fisher Ver: 1.4
Protein Prospector (Baker and Chalkley, 2014; Chalkley et al., 2005) Ver: 5.14.0
SwissProt database (Bairoch and Apweiler, 2000) N/A
Skyline v 3.0 (MacLean et al., 2010) V 3.0
Other
Immobilized metal affinity chromatography columns GE Healthcare 18-1174-40
NGC chromatography system Bio-Rad Laboratories NGC-100
10K MWCO Amicon centrifugation units MilliporeSigma UFC901008
MicroCal PEAQ-ITC Malvern N/A
Anti-FLAG antibodies coupled to magnetic beads Sigma M8823
Liquid chromatography tandem mass spectrometry Thermo Fisher N/A
Silica-C18 EasySpray column Thermo Fisher N/A