Table 3.
Amplicon | Primers | Best transcript | Gene symbol | Product length |
---|---|---|---|---|
hsa_circ_101622 | F: 5'CAGATGGACAAAGTGGAGCA3' | NM_18689 | CEMIP | 131bp |
R: 5'GCTGGGGAAGTCATTCTTGA3' | ||||
hsa_circ_022382 | F: 5'GGATGGCTGCAACATGATTA3' | NM_004265 | FADS2 | 157bp |
R: 5'TCAGCAGGGGTTTCAAGAAC3' | ||||
hsa_circ_100833 | F: 5'GCCAAGCCTAACATCTTCCA3' | NM_004265 | FADS2 | 145bp |
R: 5'TCAGCAGGGGTTTCAAGAAC3' | ||||
hsa_circ_101621 | F: 5'ACCCACCCACATACATCAGG3' | NM_018689 | CEMIP | 132bp |
R: 5'ATGTCCACGCCGTCTATCTC3' | ||||
hsa_circ_008068 | F: 5'TGATGAAGCTTTGCGAAGAA3' | NM_032116 | KATNAL1 | 137bp |
R: 5'CGTAATTTCCAAGAAGGGCATA3' | ||||
hsa_circ_051749 | F: 5'TCATCTTCCTCGCCAGCTAC3' | NM_000836 | GRIN2D | 142bp |
R: 5'AGTGAGGCACATGACGAACA3' | ||||
hsa_circ_407279 | F: 5'CCCAGTGGAGGCTGTTCTAC3' | NM_138780 | SYTL5 | 130bp |
R: 5'AAGATTCCCCCAAGGAATTC3' | ||||
hsa_circ_406503 | F: 5'AGTTGTGGGGTGGTCCTCTG3' | NR_037884 | LOC100507053 | 170bp |
R: 5'TAGCAGAAAACTGCGGGTCT3' | ||||
hsa_circ_406549 | F: 5'CTGGTTCCTCAGCTCTCCAC3' | NM_000901 | NR3C2 | 169bp |
R: 5'GGATCATCTGTTTGCCTGCT3' | ||||
hsa_circ_406015 | F: 5'CGGACAGCCTCTCAGTCTCT3' | NM_015265 | SATB2 | 197bp |
R: 5'GTTGTCGGTGTCGAGGTTTT3' | ||||
GAPDH mRNA | F: 5'GGGAAACTGTGGCGTGAT3' | NM_001289746 | GAPDH | 299bp |
R: 5'GAGTGGGTGTCGCTGTTGAC3' | ||||
FADS2 mRNA | F: 5'ACGCTGGAGAAGATG3' | NM_004265 | FADS2 | 307bp |
R: 5'GCCGTGATGAGGGTAG3' |
F: forward; R: reverse; Chr: chromosome; bp: base pairs.