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. 2020 Aug 19;52(7):814–816. doi: 10.1016/j.pathol.2020.08.002

Table 1.

List of oligonucleotides used in this study

Name Oligonucleotides Nucleotide positiona Notes
Sarbeco_E-F1 5ʹACAGGTACGTTAATAGTTAATAGCGT 26237–26262 E-Gene Original primer5
Sarbeco_E-R2 5ʹATATTGCAGCAGTACGCACACA 26328–26349 E-Gene Original primer5
Sarbeco_E-probe 5ʹACACTAGCCATCCTTACTGCGCTTCG 26300–26325 E-Gene Original probe5
Sarbeco_E-altF2 5ʹCTTATGTACTCATTCGTTTCGGAAGA 26210–26235 E-Gene Flanking primer
Sarbeco_E-altF3 5ʹGTAAGCACAAGCTGATGAGTACGA 26185–26208 E-Gene Flanking primer
Sarbeco_E-altF4 5ʹ GACGACGACTACTAGCGTGCCTT 26161–26183 E-Gene Flanking primer
Sarbeco_E-altR2 5ʹ GAAGGTTTTACAAGACTCACGTTAACA 26350–26376 E-Gene Flanking primer
Sarbeco_E-altR3 5ʹ GAAGAATTCAGATTTTTAACACGAGAGTAAA 26385–26415 E-Gene Flanking primer
Sarbeco_E-altR4 5ʹ GTTCGTTTAGACCAGAAGATCAGGAA 26421–26446 E-Gene Flanking primer
RdRP_SARSr-F2 5ʹ GTGARATGGTCATGTGTGGCGG 15399–15420 RdRP Gene Original primer5
RdRP_SARSr-R1 5ʹ CARATGTTAAASACACTATTAGCATA 15473–15498 RdRP Gene Original primer5
RdRP_SARSr-P2 5ʹ CAGGTGGAACCTCATCAGGAGATGC 15438–15462 RdRP Gene Original probe5
RdRP_SARSr-altF3 5ʹ GTTTCTATAGATTAGCTAATGAGTGTGCTCAA 15360–15391 RdRP Gene Flanking primer
RdRP_SARSr-altF4 5ʹ CTTGTTCTTGCTCGCAAACATACAA 15314–15338 RdRP Gene Flanking primer
RdRP_SARSr-altR2 5ʹ GCATTAACATTGGCCGTGACA 15505–15525 RdRP Gene Flanking primer
RdRP_SARSr-altR3 5ʹ TCGGCAATTTTGTTACCATCAGTAGATA 15531–15558 RdRP Gene Flanking primer
a

Nucleotide position used reference genome Genbank ID: MN938384.