Table 2.
List of cancer genomics databases.
| # | Cancer genomic database name | Cancer alteration types | Organisms | Public data |
|---|---|---|---|---|
| 1 | The Cancer Genome Atlas (TCGA) | Copy number, mutation, methylation, gene expression, miRNA expression | Human | Yes |
| 2 | The International Cancer Genome Consortium (ICGC) | Mutation | Human | Yes |
| 3 | Catalog of Somatic Mutations in Cancer (COSMIC) | Mutation | Human | No |
| 4 | cBio Cancer Genomics Portal | Copy number, mutation, methylation, gene expression, miRNA expression, protein, phosphorylation | Human | Yes |
| 5 | MethyCancer | Methylation | Human | Yes |
| 6 | MutaGene | Mutation | Human | Yes |
| 7 | Moonshot project | Copy number, gene expression | Human | Yes |
| 8 | Integrative Oncogenomics Cancer Browser (IntOGen) | Copy number, mutation, gene expression | Human | Yes |
| 9 | Mouse Retrovirus Tagged Cancer Gene Database | Mutation | Mouse | Yes |
| 10 | Mouse Tumor Biology Database | Copy number, mutation, methylation, gene expression | Mouse | No |
| 11 | OncoDB.HCC | Copy number, gene expression, QTL | Human, mouse, rat | No |
| 12 | UCSC Cancer Genomics Browser | Copy number, mutation, gene expression, miRNA | Human, mouse, rat | Yes |