TABLE 4.

Sequencing reaction data for ClickSeq libraries from chikungunya virus AF15561-infected mice^a

Organ	Replicate no.	No. of reads			Median nt coverage
		Total	Host	Virus
Serum	1	1,991,095	12,324,949	372,210	2,997.5
	2	4,914,494	10,770,576	3,914,465	31,977.5
	3	10,150,263	17,439,351	8,628,164	71,524
	4	7,835,883	7,601,111	6,761,112	55,618
SKM-CL	1	12,920,938	12,777,208	44,073	294
	2	10,884,345	10,491,084	1,538,267	12,460
	3	12,120,048	15,199,969	236,946	1,867.5
	4	12,243,525	7,495,822	309,850	1,863
SKM-IS	1	12,231,654	15728625	2,893,892	20,349
	2	15,379,613	14,818,574	1,665,210	14,151
	3	14,997,585	12,895,046	1,297,009	10,213
	4	8,801,363	1,078,426	1,739,616	13,525
Heart	1	13,286,951	1,391,885	225,684	1,182
	2	11,620,802	669,058	273,366	1,459.5
	3	18,709,794	1150507	223,552	1,388
	4	8,152,377	636,741	37,435	216
Kidney	1	13,810,118	12,107,848	277,261	1,553
	2	11,063,493	8,848,847	54,343	267
	3	16,439,432	11,317,154	297,215	2,017
	4	8,037,635	11,204,970	31,460	198
Spleen	1	6,362,763	8,714,336	9,324	75
	2	10,006,661	11,461,848	1,548	0
	3	8,877,156	13,106,104	730	0
	4	1,009,068	6,548,374	148	0
Liver	1	16,473,789	5,225,328	19,659	141
	2	15,456,139	6,370,167	13,516	88
	3	13,565,351	3,867,685	9,170	64
	4	1,652,843	530,545	484	0

^ant, nucleotide; SKM-CL, skeletal muscle from contralateral leg; SKM-IS, skeletal muscle from injection site.