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. 2020 Aug 20;20(Suppl 5):141. doi: 10.1186/s12911-020-01150-w

Table 10.

Performance comparison of the classifier, for the Basic AE, when changing the imputation strategy at the data preprocessing step

Strategy Top Layers (AEs) Accuracy (%) MCC Precision (%) Recall (%) F1 score
Fixing the AE weights (Approach A)
Mean AE: Encoding Layers 88.40 ±5.52 0.59 ±0.17 68.39 ±19.13 64.80 ±10.84 65.91 ±13.72
AE: Complete AE 91.77 ±3.13 0.69 ±0.12 80.57 ±11.79 67.00 ±11.24 72.91 ±10.86
CV AE: Encoding Layers 91.93 ±2.13 0.69 ±0.10 79.43 ±6.20 69.40 ±10.96 73.81 ±8.14
AE: Complete AE 93.23 ±1.99 0.74 ±0.08 83.41 ±5.85 74.20 ±9.59 78.31 ±6.95
MFV AE: Encoding Layers 92.50 ±2.36 0.71 ±0.10 82.60 ±7.41 70.00 ±13.40 75.16 ±9.23
AE: Complete AE 93.27 ±1.71 0.74 ±0.07 84.97 ±4.01 72.40 ±9.74 77.91 ±6.54
Fine-Tuning the AE Weights (Approach B)
Mean AE: Encoding Layers 99.33 ±0.52 0.98 ±0.02 97.85 ±2.32 98.20 ±1.48 98.01 ±1.55
AE: Complete AE 99.30 ±0.37 0.98 ±0.01 99.00 ±1.06 96.80 ±2.35 97.87 ±1.15
CV AE: Encoding Layers 99.40 ±0.49 0.98 ±0.02 98.63 ±2.04 97.80 ±2.39 98.23 ±1.48
AE: Complete AE 99.30 ±0.53 0.98 ±0.02 99.01 ±1.39 96.80 ±3.29 97.97 ±1.38
MFV AE: Encoding Layers 99.47 ±0.32 0.98 ±0.01 98.83 ±1.64 98.00 ±2.11 98.39 ±0.98
AE: Complete AE 99.13 ±0.57 0.97 ±0.02 98.77 ±1.71 96.00 ±2.31 97.36 ±1.74

The experiment pipeline remains the same, under the same evaluation metrics. The Strategy column represents the imputation strategy used. The ∗ symbol represents the default strategy. The following abreviations were used: CV for Constante Value, and MFV for Most Frequent Value