REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Mouse anti-His-647 | R&D Systems | Cat#IC0501R |
Penta·His Antibody; BSA free | QIAGEN | Cat#34660; RRID:AB2619735 |
Polyclonal Rabbit-Anti-Mouse Immunoglobulin HRP | Agilent | Cat#P0161; RRID:AB2687969 |
Bacterial and Virus Strains | ||
Mix & Go Competent Cells - Strain DH5 Alpha | Zymo Research | Cat#T3007 |
Chemicals, Peptides, and Recombinant Proteins | ||
2-mercaptoethanol | Thermo Fisher Scientific | Cat#21985023 |
4-12% Bis-Tris NuAPGE Protein Gels | Thermo Fisher Scientific | Cat#NP0322 |
4–20% Criterion TGX Precast Midi Protein Gel | Bio-Rad | Cat#5671095 |
4–20% Mini-PROTEAN® TGX Precast Protein Gels | Bio-Rad | Cat#4561096 |
Adenosine 5′-triphosphate disodium Salt Hydrate (ATP) | Sigma | Cat#A2383-10G |
Alexa Fluor 647 NHS Ester (Succinimidyl Ester) | Thermo Fisher Scientific | Cat#A37573 |
Alkaline Phosphatase | Thermo Fisher Scientific | Cat#31391 |
Amersham ECL Prime Western Blotting Detection Reagent | Fisher Scientific | Cat#45-002-401 |
Antibiotic-Antimycotic Solution (100x) | Fisher Scientific | Cat#15-240-096 |
AscI Restriction Enzyme | New England Biolabs | Cat#R0558S |
β-Nicotinamide adenine dinucleotide (NAD+) 50 mM solution | New England Biolabs | Cat#B9007S |
Bicine | Sigma | Cat#B8660-100G |
Bio-Safe Coomassie Stain | Bio-Rad | Cat#1610786 |
BirA Ligase | Özkan et al., 2013 | N/A |
Blotting-Grade Blocker | Bio-Rad | Cat#1706404 |
Bovine Serum Albumin Fraction V | Roche | Cat#03116956001 |
Bromophenol Blue | Fisher Scientific | Cat#BP115-25 |
Carbenicillin, disodium salt | Sigma | Cat#C1389-10G |
cOmplete, EDTA-free Protease Inhibitor Cocktail | Sigma | Cat#5056489001 |
dNTP mix; 10 mM each | Genscript | Cat#C01582 |
d-Biotin | Sigma | Cat#B4501-5G |
DTT | Sigma | Cat#D0632-25G |
Expi293 Expression Medium | Thermo Fisher Scientific | Cat#A14635 |
ExpiFectamine | Thermo Fisher Scientific | Cat#A14635 |
Fetal Bovine Serum, ultra-low IgG | Thermo Fisher Scientific | Cat#16250078 |
FreeStyle 293 Expression Medium | Thermo Fisher Scientific | Cat#12338026 |
Glycerol | Fisher Scientific | Cat#BP229-4 |
HBS-P+ Buffer 10X | GE Healthcare | Cat#BR-1006-71 |
HEPES solution, 1 M, pH 7.0-7.6 | Sigma | Cat#H0887 |
Imidazole | Acros Organics | Cat#12202-5000 |
InstantBlue Protein Stain | Expedeon | Cat#ISB1L |
LB Agar, Miller (Powder), 2 kg | Fisher Scientific | Cat#BP1425-2 |
Linear Polyethylenimine | Fisher Scientific | Cat#NC9197339 |
Invitrogen UltraPure Agarose | Thermo Fisher Scientific | Cat#16500500 |
Ethidium Bromide (1% Solution), 10 mL | Fisher Scientific | Cat#BP1302-10 |
Luria-Bertani (LB) Broth (Miller) | Sigma | Cat#L3522-1KG |
MACS buffer | Miltenyi | Cat#130-091-221 |
Magnesium acetate, hexahydrate | Sigma | Cat#M5661-250G |
Magnesium chloride hexahydrate | Sigma | Cat#M9272-100G |
MOPS NuPAGE SDS Running Buffer (20X) | Thermo Fisher Scientific | Cat#NP0001 |
Ni-NTA Agarose | QIAGEN | Cat#30250 |
NotI-HF Restriction Enzyme | New England Biolabs | Cat#R3189L |
Opti-MEM Reduced Serum | Thermo Fisher Scientific | Cat#31985062 |
PEG-8000 | Sigma | Cat#81268-1KG |
Phosphate Buffered Saline, pH 7.2 | GIBCO | Cat#20012-043 |
Phusion HF DNA Polymerase | New England Biolabs | Cat#M0530L |
Propidium iodide | Thermo Fisher Scientific | Cat#P3566 |
Precision Plus Protein Dual Color Standards | Bio-Rad | Cat#1610374 |
Recombinant Human Angiopoietin-1 Protein, CF | R&D Systems | Cat#923-AN-025/CF |
Recombinant Human β-NGF | R&D Systems | Cat#256-GF/CF |
Recombinant Human Leptin Protein, CF | R&D Systems | Cat#398-LP-01M |
Recombinant Mouse Leptin Protein, CF | R&D Systems | Cat#498-OB-01M |
Recombinant protein A | Thermo Fisher Scientific | Cat#21184 |
SeeBlue® Plus2 Pre-stained Protein Standard | Thermo Fisher Scientific | Cat#LC5925 |
Series S Sensor Chip SA | GE Healthcare | Cat#BR-1005-31 |
Sodium bicarbonate | Fisher Scientific | Cat#BP328-500 |
Sodium Chloride | Fisher Scientific | Cat#S271-3 |
Streptavidin | Invitrogen | Cat#S888 |
Superdex 200 Increase column | GE Healthcare | Cat#28990944 |
Superose S6 column | GE Healthcare | Cat#17-5172-01 |
T5 Exonuclease | New England Biolabs | Cat#M0363L |
Taq Ligase | New England Biolabs | Cat#M0530L |
Trans-Blot® Turbo RTA Midi PVDF Transfer Kit | Bio-Rad | Cat#1704273 |
Tris base | Fisher Scientific | Cat#BP152-1 |
Tris-HCl | Fisher Scientific | Cat#BP153-1 |
Tween-20; Sigma | Sigma | Cat#P1379-500ML |
Ultrapure SDS | Life Technologies | Cat#15525-017 |
Critical Commercial Assays | ||
BCA Kit | Pierce | Cat#23227 |
KPL BluePhos Microwell Substrate Kit | VWR | Cat#95059-220 |
QIAQuick Gel Extraction Kit | QIAGEN | Cat#28506 |
QIAprep Spin Miniprep Kit | QIAGEN | Cat#27106 |
Deposited Data | ||
Dryad | This Study | https://doi.org/10.5061/dryad.xsj3tx9bd |
Experimental Models: Cell Lines | ||
Expi 293F cells | Thermo Fisher Scientific | Cat#A14635; RRID: CVCL_D615 |
HEK293 Freestyle cells | Thermo Fisher Scientific | Cat#:R79007; RRID:CVCL_6642 |
Oligonucleotides | ||
ISLR2 LRR1-7 forward: 5′- CTGAGCTACATCTTC TGCCTGGTGTTCGCTGCGGCCGCCTCTTGTCC TGAACCTTGTGCCTGCG-3′ |
This Study | N/A |
ISLR2 LRR1-7 reverse: 5′- CCAGGCCC TTGAAACAGAACTTCCAACCCCGGC GCGCCAGGAGCGCAAGGCAGAGCAG-3′ |
This Study | N/A |
ISLR2 Ig1-3 forward: 5′-CTGAGCTACATCTTC TGCCTGGTGTTCGCTGCGGCCGCCCCTAGC GTTCACCTGTCTGCC-3′ |
This Study | N/A |
ISLR2 Ig1-3 reverse: 5′-CCAGGCCCTTGAAAC AGAACTTCCAACCCCGGCGCGCCAGAGGGC AGCTCTTTCTTGGTGC-3′ |
This Study | N/A |
pD649-HAsp-ECD-Fc(DAPA)-AviTag-6xHis (sequencing) forward:5′-ATTTAGGTGACACTATAG-3′ | This Study | N/A |
pD649-HAsp-ECD-Fc(DAPA)-AviTag-6xHis (sequencing) reverse: 5′-CACGTACCAGTTGAACTTCACC-3′ | This Study | N/A |
Recombinant DNA | ||
pD649-HAsp-ECD-Fc(DAPA)-AviTag-6xHis | This study | Addgene |
pD649-HAsp-ECD-COMP5AP-AviTag-9xHis | This study | Addgene |
pTT3-SP-6XHis-NTRK1(FL)-FLAG | This study | Addgene |
pTT3-SP-6XHis-TIE1(FL)-FLAG | This study | Addgene |
pTT3-SP-6XHis-PVR(FL)-FLAG | This study | Addgene |
pTT3-SP-6XHis-KIR2DL5(FL)-FLAG | This study | Addgene |
pTT3-SP-6XHis-KIR2DL4(FL)-FLAG | This study | Addgene |
pTT3-SP-6XHis-KIR2DL1(FL)-FLAG | This study | Addgene |
pTT3-SP-6XHis-ISLR2(FL)-FLAG | This study | Addgene |
Software and Algorithms | ||
Biacore T200 Control Software (version 3.2) | GE Healthcare | https://www.biacore.com/lifesciences/service/downloads/downloads/index.html |
BioGRID3.5 | Oughtred et al., 2019 | https://thebiogrid.org/ |
CytExpert 2.3 | Beckman Coulter | https://www.beckman.com/flow-cytometry/instruments/cytoflex/software |
FlowJo 10.4.2 | FlowJo | https://www.flowjo.com/ |
HUGO Gene Nomenclature Committee (HGNC) | Yates et al., 2017 | https://www.genenames.org/ |
Human Protein Atlas | Uhlén et al., 2015 | https://www.proteinatlas.org/ |
IntAct | Orchard et al., 2014 | https://www.ebi.ac.uk/intact/ |
Interactive Tree of Life (iTOL) (version 5.5) | Letunic and Bork, 2019 | https://itol.embl.de/ |
MAFFT (Multiple Alignment using Fast Fourier Transform) | Kuraku et al., 2013; Katoh et al., 2019 | https://mafft.cbrc.jp/alignment/server/ |
MUltiple Sequence Comparison by Log- Expectation (MUSCLE) | Edgar, 2004 | https://www.ebi.ac.uk/Tools/msa/muscle/ |
PredGPI | Pierleoni et al., 2008 | http://gpcr.biocomp.unibo.it/predgpi/pred.htm |
SignalP-5.0 | Almagro Armenteros et al., 2019 | http://www.cbs.dtu.dk/services/SignalP/ |
SnapGene 5.1 | GSL Biotech LLC | https://www.snapgene.com/ |
STRING (version 11.0) | Szklarczyk et al., 2019 | |
SoftMax Pro | Molecular Devices | https://www.moleculardevices.com/products/microplate-readers/acquisition-and-analysis-software/softmax-pro-software |
Freedom EVOware Standard (version 2.5) Service Pack 3, Build 2.5.21.0 | TECAN | https://lifesciences.tecan.com/software-freedom-evoware? |
TMHMM2.0 | Krogh et al., 2001 | http://www.cbs.dtu.dk/services/TMHMM/ |
UniProt | The UniProt Consortium | https://www.uniprot.org/ |
Other | ||
Econo-Pak Chromatography Column | Bio-Rad | Cat#7321011 |
12-Column Reservoirs | Agilent | Cat#201256-100 |
12-Column Reservoirs | Integra | Cat#6361 |
96-well deep well plates | USA Scientific | Cat#1896-2110 |
96-well round-bottom plate | Corning | Cat#3799 |
AirOtop Enhanced Seal for Ultra Yield | Fisher Scientific | Cat#NC0063892 |
Aluminum Foil Seals | Corning | Cat#7200684 |
Amicon Ultra-4 Centrifugal Filter Unit | EMD Millipore | Cat#UFC805024 |
Amicon Ultra-15 Centrifugal Filter Unit | EMD Millipore | Cat#UFC901024 |
Hyperfilm ECL | Sigma | Cat#GE28-9068-39 |
Nunc clear flat-bottom maxisorp 384-well plates | Thermo Fisher Scientific | Cat#464718 |
Nunc clear flat-bottom maxisorp 384-well plates | Thermo Fisher Scientific | Cat#464718 |
Nunc clear flat-bottom maxisorp 96-well plates | Thermo Fisher Scientific | Cat#442404 |
PolarSeal | E&K Scientific | Cat#T592100 |
Rapid-Flow Sterile Disposable Filter Units with PES Membrane; 250 ml (0.2 um) | Thermo Fisher Scientific | Cat#168-0045 |
Rapid-Flow Sterile Disposable Filter Units with PES Membrane; 50 ml (0.2 um) | Thermo Fisher Scientific | Cat#564-0020 |
Rapid-Flow Sterile Disposable Filter Units with PES Membrane; 1 L (0.2 um) | Thermo Fisher Scientific | Cat#567-0020 |
Seahorse Single Cavity P.P. Pyramid Base Reservoirs | Agilent | Cat#201244-100 |
TECAN TP unfiltered 200 ul tips; Zymark | MBP/Thermo Fisher Scientific | Cat#923-261 |
TECAN TR unfiltered 100 ul tips; Zymark | MBP/Thermo Fisher Scientific | Cat#907-261 |