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. 2020 Aug 20;182(4):1027–1043.e17. doi: 10.1016/j.cell.2020.07.025
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse anti-His-647 R&D Systems Cat#IC0501R
Penta·His Antibody; BSA free QIAGEN Cat#34660; RRID:AB2619735
Polyclonal Rabbit-Anti-Mouse Immunoglobulin HRP Agilent Cat#P0161; RRID:AB2687969

Bacterial and Virus Strains

Mix & Go Competent Cells - Strain DH5 Alpha Zymo Research Cat#T3007

Chemicals, Peptides, and Recombinant Proteins

2-mercaptoethanol Thermo Fisher Scientific Cat#21985023
4-12% Bis-Tris NuAPGE Protein Gels Thermo Fisher Scientific Cat#NP0322
4–20% Criterion TGX Precast Midi Protein Gel Bio-Rad Cat#5671095
4–20% Mini-PROTEAN® TGX Precast Protein Gels Bio-Rad Cat#4561096
Adenosine 5′-triphosphate disodium Salt Hydrate (ATP) Sigma Cat#A2383-10G
Alexa Fluor 647 NHS Ester (Succinimidyl Ester) Thermo Fisher Scientific Cat#A37573
Alkaline Phosphatase Thermo Fisher Scientific Cat#31391
Amersham ECL Prime Western Blotting Detection Reagent Fisher Scientific Cat#45-002-401
Antibiotic-Antimycotic Solution (100x) Fisher Scientific Cat#15-240-096
AscI Restriction Enzyme New England Biolabs Cat#R0558S
β-Nicotinamide adenine dinucleotide (NAD+) 50 mM solution New England Biolabs Cat#B9007S
Bicine Sigma Cat#B8660-100G
Bio-Safe Coomassie Stain Bio-Rad Cat#1610786
BirA Ligase Özkan et al., 2013 N/A
Blotting-Grade Blocker Bio-Rad Cat#1706404
Bovine Serum Albumin Fraction V Roche Cat#03116956001
Bromophenol Blue Fisher Scientific Cat#BP115-25
Carbenicillin, disodium salt Sigma Cat#C1389-10G
cOmplete, EDTA-free Protease Inhibitor Cocktail Sigma Cat#5056489001
dNTP mix; 10 mM each Genscript Cat#C01582
d-Biotin Sigma Cat#B4501-5G
DTT Sigma Cat#D0632-25G
Expi293 Expression Medium Thermo Fisher Scientific Cat#A14635
ExpiFectamine Thermo Fisher Scientific Cat#A14635
Fetal Bovine Serum, ultra-low IgG Thermo Fisher Scientific Cat#16250078
FreeStyle 293 Expression Medium Thermo Fisher Scientific Cat#12338026
Glycerol Fisher Scientific Cat#BP229-4
HBS-P+ Buffer 10X GE Healthcare Cat#BR-1006-71
HEPES solution, 1 M, pH 7.0-7.6 Sigma Cat#H0887
Imidazole Acros Organics Cat#12202-5000
InstantBlue Protein Stain Expedeon Cat#ISB1L
LB Agar, Miller (Powder), 2 kg Fisher Scientific Cat#BP1425-2
Linear Polyethylenimine Fisher Scientific Cat#NC9197339
Invitrogen UltraPure Agarose Thermo Fisher Scientific Cat#16500500
Ethidium Bromide (1% Solution), 10 mL Fisher Scientific Cat#BP1302-10
Luria-Bertani (LB) Broth (Miller) Sigma Cat#L3522-1KG
MACS buffer Miltenyi Cat#130-091-221
Magnesium acetate, hexahydrate Sigma Cat#M5661-250G
Magnesium chloride hexahydrate Sigma Cat#M9272-100G
MOPS NuPAGE SDS Running Buffer (20X) Thermo Fisher Scientific Cat#NP0001
Ni-NTA Agarose QIAGEN Cat#30250
NotI-HF Restriction Enzyme New England Biolabs Cat#R3189L
Opti-MEM Reduced Serum Thermo Fisher Scientific Cat#31985062
PEG-8000 Sigma Cat#81268-1KG
Phosphate Buffered Saline, pH 7.2 GIBCO Cat#20012-043
Phusion HF DNA Polymerase New England Biolabs Cat#M0530L
Propidium iodide Thermo Fisher Scientific Cat#P3566
Precision Plus Protein Dual Color Standards Bio-Rad Cat#1610374
Recombinant Human Angiopoietin-1 Protein, CF R&D Systems Cat#923-AN-025/CF
Recombinant Human β-NGF R&D Systems Cat#256-GF/CF
Recombinant Human Leptin Protein, CF R&D Systems Cat#398-LP-01M
Recombinant Mouse Leptin Protein, CF R&D Systems Cat#498-OB-01M
Recombinant protein A Thermo Fisher Scientific Cat#21184
SeeBlue® Plus2 Pre-stained Protein Standard Thermo Fisher Scientific Cat#LC5925
Series S Sensor Chip SA GE Healthcare Cat#BR-1005-31
Sodium bicarbonate Fisher Scientific Cat#BP328-500
Sodium Chloride Fisher Scientific Cat#S271-3
Streptavidin Invitrogen Cat#S888
Superdex 200 Increase column GE Healthcare Cat#28990944
Superose S6 column GE Healthcare Cat#17-5172-01
T5 Exonuclease New England Biolabs Cat#M0363L
Taq Ligase New England Biolabs Cat#M0530L
Trans-Blot® Turbo RTA Midi PVDF Transfer Kit Bio-Rad Cat#1704273
Tris base Fisher Scientific Cat#BP152-1
Tris-HCl Fisher Scientific Cat#BP153-1
Tween-20; Sigma Sigma Cat#P1379-500ML
Ultrapure SDS Life Technologies Cat#15525-017

Critical Commercial Assays

BCA Kit Pierce Cat#23227
KPL BluePhos Microwell Substrate Kit VWR Cat#95059-220
QIAQuick Gel Extraction Kit QIAGEN Cat#28506
QIAprep Spin Miniprep Kit QIAGEN Cat#27106

Deposited Data

Dryad This Study https://doi.org/10.5061/dryad.xsj3tx9bd

Experimental Models: Cell Lines

Expi 293F cells Thermo Fisher Scientific Cat#A14635; RRID: CVCL_D615
HEK293 Freestyle cells Thermo Fisher Scientific Cat#:R79007; RRID:CVCL_6642

Oligonucleotides

ISLR2 LRR1-7 forward: 5′- CTGAGCTACATCTTC
TGCCTGGTGTTCGCTGCGGCCGCCTCTTGTCC
TGAACCTTGTGCCTGCG-3′
This Study N/A
ISLR2 LRR1-7 reverse: 5′- CCAGGCCC
TTGAAACAGAACTTCCAACCCCGGC
GCGCCAGGAGCGCAAGGCAGAGCAG-3′
This Study N/A
ISLR2 Ig1-3 forward: 5′-CTGAGCTACATCTTC
TGCCTGGTGTTCGCTGCGGCCGCCCCTAGC
GTTCACCTGTCTGCC-3′
This Study N/A
ISLR2 Ig1-3 reverse: 5′-CCAGGCCCTTGAAAC
AGAACTTCCAACCCCGGCGCGCCAGAGGGC
AGCTCTTTCTTGGTGC-3′
This Study N/A
pD649-HAsp-ECD-Fc(DAPA)-AviTag-6xHis (sequencing) forward:5′-ATTTAGGTGACACTATAG-3′ This Study N/A
pD649-HAsp-ECD-Fc(DAPA)-AviTag-6xHis (sequencing) reverse: 5′-CACGTACCAGTTGAACTTCACC-3′ This Study N/A

Recombinant DNA

pD649-HAsp-ECD-Fc(DAPA)-AviTag-6xHis This study Addgene
pD649-HAsp-ECD-COMP5AP-AviTag-9xHis This study Addgene
pTT3-SP-6XHis-NTRK1(FL)-FLAG This study Addgene
pTT3-SP-6XHis-TIE1(FL)-FLAG This study Addgene
pTT3-SP-6XHis-PVR(FL)-FLAG This study Addgene
pTT3-SP-6XHis-KIR2DL5(FL)-FLAG This study Addgene
pTT3-SP-6XHis-KIR2DL4(FL)-FLAG This study Addgene
pTT3-SP-6XHis-KIR2DL1(FL)-FLAG This study Addgene
pTT3-SP-6XHis-ISLR2(FL)-FLAG This study Addgene

Software and Algorithms

Biacore T200 Control Software (version 3.2) GE Healthcare https://www.biacore.com/lifesciences/service/downloads/downloads/index.html
BioGRID3.5 Oughtred et al., 2019 https://thebiogrid.org/
CytExpert 2.3 Beckman Coulter https://www.beckman.com/flow-cytometry/instruments/cytoflex/software
FlowJo 10.4.2 FlowJo https://www.flowjo.com/
HUGO Gene Nomenclature Committee (HGNC) Yates et al., 2017 https://www.genenames.org/
Human Protein Atlas Uhlén et al., 2015 https://www.proteinatlas.org/
IntAct Orchard et al., 2014 https://www.ebi.ac.uk/intact/
Interactive Tree of Life (iTOL) (version 5.5) Letunic and Bork, 2019 https://itol.embl.de/
MAFFT (Multiple Alignment using Fast Fourier Transform) Kuraku et al., 2013; Katoh et al., 2019 https://mafft.cbrc.jp/alignment/server/
MUltiple Sequence Comparison by Log- Expectation (MUSCLE) Edgar, 2004 https://www.ebi.ac.uk/Tools/msa/muscle/
PredGPI Pierleoni et al., 2008 http://gpcr.biocomp.unibo.it/predgpi/pred.htm
SignalP-5.0 Almagro Armenteros et al., 2019 http://www.cbs.dtu.dk/services/SignalP/
SnapGene 5.1 GSL Biotech LLC https://www.snapgene.com/
STRING (version 11.0) Szklarczyk et al., 2019
SoftMax Pro Molecular Devices https://www.moleculardevices.com/products/microplate-readers/acquisition-and-analysis-software/softmax-pro-software
Freedom EVOware Standard (version 2.5) Service Pack 3, Build 2.5.21.0 TECAN https://lifesciences.tecan.com/software-freedom-evoware?
TMHMM2.0 Krogh et al., 2001 http://www.cbs.dtu.dk/services/TMHMM/
UniProt The UniProt Consortium https://www.uniprot.org/

Other

Econo-Pak Chromatography Column Bio-Rad Cat#7321011
12-Column Reservoirs Agilent Cat#201256-100
12-Column Reservoirs Integra Cat#6361
96-well deep well plates USA Scientific Cat#1896-2110
96-well round-bottom plate Corning Cat#3799
AirOtop Enhanced Seal for Ultra Yield Fisher Scientific Cat#NC0063892
Aluminum Foil Seals Corning Cat#7200684
Amicon Ultra-4 Centrifugal Filter Unit EMD Millipore Cat#UFC805024
Amicon Ultra-15 Centrifugal Filter Unit EMD Millipore Cat#UFC901024
Hyperfilm ECL Sigma Cat#GE28-9068-39
Nunc clear flat-bottom maxisorp 384-well plates Thermo Fisher Scientific Cat#464718
Nunc clear flat-bottom maxisorp 384-well plates Thermo Fisher Scientific Cat#464718
Nunc clear flat-bottom maxisorp 96-well plates Thermo Fisher Scientific Cat#442404
PolarSeal E&K Scientific Cat#T592100
Rapid-Flow Sterile Disposable Filter Units with PES Membrane; 250 ml (0.2 um) Thermo Fisher Scientific Cat#168-0045
Rapid-Flow Sterile Disposable Filter Units with PES Membrane; 50 ml (0.2 um) Thermo Fisher Scientific Cat#564-0020
Rapid-Flow Sterile Disposable Filter Units with PES Membrane; 1 L (0.2 um) Thermo Fisher Scientific Cat#567-0020
Seahorse Single Cavity P.P. Pyramid Base Reservoirs Agilent Cat#201244-100
TECAN TP unfiltered 200 ul tips; Zymark MBP/Thermo Fisher Scientific Cat#923-261
TECAN TR unfiltered 100 ul tips; Zymark MBP/Thermo Fisher Scientific Cat#907-261