Table 5.
The percentage of missing data (including gaps), estimated gamma shape parameter (mean and 95% HPD interval), Sackin index (Mooers and Heard, 1997) measuring the balance of the consensus tree, and estimated size of the 95% credible set, for each of the six data sets
| Data set | Missing | Gamma shape ( ) |
Sackin index | 95% Credible set |
|---|---|---|---|---|
| SQ10 | 4.1% | 0.47 (0.46, 0.49) | 0.83 | 45604 |
| DA10 | 18.0% | 0.46 (0.44, 0.49) | 0.90 | 45604 |
| LZ12 | 0.05% | 0.27 (0.25, 0.29) | 0.78 | 45604 |
| CL12 | 13.9% | 0.96 (0.89, 1.03) | 1.15 | 45604 |
| AZ12 | 7.2% | 0.41 (0.39, 0.42) | 0.75 | 45604 |
| NP11 | 83.9% | 0.78 (0.71, 0.85) | 0.94 | 45604 |
Notes: The Sackin index is normalized under the uniform model (Blum et al., 2006). Larger Sackin index indicates less balanced tree. The true credible sets are likely to be much larger; the run settings constrain the estimates to a maximum value. See text for further discussion.