. 2020 Aug 20;10:14034. doi: 10.1038/s41598-020-69442-9

Table 1.

Summary of significant SNP markers identified by GWAS mapping associated with tillering number traits.

Trait	Env	SNP	Chromosome	Position (bp)	− log₁₀(p-value)	Allele	MAF^a	FDR	Effect
FTN	Normal	IWA5084	1A	369,697,871	5.12	A/G	0.196	0.00961	− 0.565
FTN	Normal	IWB39005	2A	36,632,023	8.69	A/G	0.136	0.00001	− 1.224
FTN	Normal	IWB28961	2B	713,676,010	5.21	A/G	0.147	0.00961	0.760
FTN	Normal	IWB11256	5D	489,775,906	4.60	C/T	0.136	0.02648	− 0.704
FTN	Normal	IWA4483	7A	692,340,211	5.81	C/T	0.272	0.00328	0.749
FTN	Normal	IWB19377	7D	58,491,640	7.28	A/G	0.120	0.00017	− 1.041
FTN	All	IWA5084	1A	369,697,871	4.77	A/G	0.196	0.02129	− 0.388
FTN	All	IWB36728	2A	500,529,738	5.49	C/T	0.179	0.00515	− 0.618
FTN	All	IWB39005	2A	36,632,023	6.33	A/G	0.136	0.00130	− 0.693
FTN	All	IWB44377	7A	33,364,868	6.21	C/T	0.473	0.00130	0.492
FTN	All	IWA4483	7A	692,340,211	6.74	C/T	0.272	0.00115	0.677
TTN	Normal	IWB39005	2A	36,632,023	5.11	A/G	0.136	0.01213	− 0.133
TTN	Normal	IWB25250	6A	574,486,383	4.90	C/T	0.250	0.01574	− 0.115
TTN	Normal	IWA1406	6D	463,447,036	6.75	A/G	0.190	0.00056	− 0.174
TTN	Normal	IWB44155	7A	323,740,318	7.36	C/T	0.158	0.00027	0.161
TTN	Normal	IWB44377	7A	33,364,868	6.57	C/T	0.473	0.00057	0.107
TTN	Stress	IWB53633	1A	517,488,008	4.58	A/G	0.361	0.05061	0.271
TTN	Stress	IWB74344	1A	1,208,254	5.81	C/T	0.117	0.00492	0.346
TTN	Stress	IWA6592	2A	715,301,715	6.46	C/T	0.239	0.00221	0.287
TTN	Stress	IWB25244	6B	626,453,853	4.50	G/T	0.106	0.05061	− 0.295
TTN	All	IWB9024	2A	747,144,155	4.51	C/T	0.413	0.05001	− 0.369
TTN	All	IWB55568	2D	641,963,416	6.22	A/G	0.473	0.00128	0.558
TTN	All	IWB44155	7A	323,740,318	7.51	C/T	0.158	0.00010	0.857
TTN	All	IWB44377	7A	33,364,868	7.91	C/T	0.473	0.00008	0.607

The FDR corrected threshold (− log₁₀ (p-value) ≥ 4.5) was used to identify significant SNP–trait associations. a: Minor allele frequency. TTN: Total tiller number; FTN: Fertile tiller number; Normal: BLUEs value across all normal irrigation conditions; Stress: BLUEs value across all drought stress conditions; All: BLUEs value based on 6 environmets under normal and drought stress conditions.