Fig. 5.

Comparative phylogenetic analysis of SA G5 and SA H29 strains with their closely related S. aureus strains. a Neighbor-joining tree prepared from the 16S rRNA gene sequences of SA G5, SA H29, and other related strains. Bacillus cereus ATCC 14,579 was used as an out-group and branch values are calculated from 500 bootstrap replicates. b Maximum likelihood (ML) tree based on all shared proteins (core) obtained from the S. aureus genome sequences, where B. cereus ATCC14579 was used as an out-group. The ML tree was prepared with the help of RAxML program. c Phylogeny tree based on the concatenated alignment of the high-quality SNPs using CSI phylogeny tool