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Comparison of annotations of SR-seq and hybrid-seq assemblies refined and updated by PASA software. Existing artichoke genome annotation was used as reference
| SR-seq | Hybrid-seq | |
|---|---|---|
| Newly annotated genes | 502 | 578 |
| Entirely new | 302 | 551 |
| Split genes | 200 | 227 |
| Updated genes | 13,796 | 12,924 |
| Alternative gene structure | 8107 | 7769 |
| UTR alternation | 4838 | 4332 |
| Protein modification | 939 | 870 |
| Gene merging | 114 | 115 |
| Alternatively spliced isoforms | 8945 | 10,613 |
| Proteins modified | 9341 | 8960 |
