Table 4.
Energetic components of the binding free energy of RdRp and natural polyphenols along with remdesivir complexes in kcal/mol. Data are represented as average ± SEM.
Components | Remdesivir | EGCG | TF3 | TF2b | TF2a |
---|---|---|---|---|---|
ΔEvdW | −31.85 ± 0.15 | −25.11 ± 0.18 | −37.82 ± 0.21 | −30.66 ± 0.23 | −22.55 ± 0.19 |
ΔEelec | −98.40 ± 0.70 | −69.38 ± 0.73 | −123.63 ± 0.88 | −47.18 ± 0.64 | −95.28 ± 1.27 |
ΔGpol | 109.97 ± 0.57 | 71.62 ± 0.48 | 124.47 ± 0.58 | 55.01 ± 0.49 | 94.94 ± 1.10 |
ΔGnp | −4.29 ± 0.01 | −4.15 ± 0.01 | −5.29 ± 0.01 | −3.91 ± 0.01 | −4.28 ± 0.02 |
aΔGsolv | 105.68 ± 0.57 | 67.47 ± 0.48 | 119.18 ± 0.58 | 51.1 ± 0.49 | 90.66 ± 1.10 |
bΔGpol + elec | 11.57 ± 0.90 | 2.24 ± 0.87 | 0.84 ± 1.05 | 7.83 ± 0.80 | −0.34 ± 1.68 |
cΔEMM | −130.25 ± 0.71 | −94.49 ± 0.75 | −161.45 ± 0.90 | −77.84 ± 0.68 | −117.83 ± 1.28 |
ΔGbindSim | −24.57 ± 0.91 | −27.02 ± 0.89 | −42.27 ± 1.07 | −26.74 ± 0.83 | −27.17 ± 1.69 |
ΔGsolv = ΔGnp + ΔGpol,
ΔGpol + elec = ΔEelec + ΔGpol,
ΔEMM = ΔEvdW + ΔEelec.