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. 2020 Jul 21:1–13. doi: 10.1080/07391102.2020.1794972

Table 4.

Details of binding free energies (± standard deviation) for deoxycylindrospermopsin-SARS-CoV-2 Mpro and deoxycylindrospermopsin-SARS-CoV-2 PLpro complexes calculated using MM-PBSA method from 20 to 120 ns with 20 ns interval.

Complexes Time (ns) van der Waals energy (kcal/mol) SASA energy (kcal/mol) Electrostatic energy (kcal/mol) Polar solvation energy (kcal/mol) Binding energy (kcal/mol)
deoxycylindrospermopsin- SARS-CoV-2 protease Mpro 20 −40.68 ± 2.43 −3.77 ± 0.43 −8.92 ± 0.41 16.96 ± 1.23 −36.41 ± 2.04
40 −42.90 ± 2.16 −3.96 ± 0.35 −9.24 ± 0.52 17.71 ± 1.34 −38.39 ± 1.69
60 −44.33 ± 2.76 −4.08 ± 0.49 −9.53 ± 0.39 18.20 ± 1.10 −39.74 ± 2.54
80 −46.04 ± 2.34 −4.14 ± 0.46 −9.74 ± 0.47 18.56 ± 0.87 −41.36 ± 2.40
100 −49.73 ± 1.98 −4.21 ± 0.32 −9.84 ± 0.45 18.91 ± 0.73 −44.87 ± 2.02
120 −50.38 ± 1.65 −4.25 ± 0.26 −9.98 ± 0.31 19.17 ± 0.56 −45.44 ± 1.66
deoxycylindrospermopsin- SARS-CoV-2 protease PLpro 20 −38.29 ± 2.63 −3.46 ± 0.34 −8.20 ± 0.56 15.58 ± 1.34 −34.37 ± 2.19
40 −40.25 ± 2.45 −3.64 ± 0.27 −8.48 ± 0.61 16.27 ± 1.49 −36.1 ± 1.84
60 −42.17 ± 2.58 −3.75 ± 0.36 −8.75 ± 0.43 16.72 ± 1.76 −37.95 ± 1.61
80 −44.12 ± 2.32 −3.89 ± 0.41 −8.94 ± 0.52 17.05 ± 1.32 −39.9 ± 1.93
100 −44.94 ± 2.15 −3.97 ± 0.32 −9.04 ± 0.41 17.37 ± 0.92 −40.58 ± 1.96
120 −45.73 ± 1.79 −4.10 ± 0.21 −9.17 ± 0.36 17.61 ± 0.77 −41.39 ± 1.59