Table 4.
Details of binding free energies (± standard deviation) for deoxycylindrospermopsin-SARS-CoV-2 Mpro and deoxycylindrospermopsin-SARS-CoV-2 PLpro complexes calculated using MM-PBSA method from 20 to 120 ns with 20 ns interval.
Complexes | Time (ns) | van der Waals energy (kcal/mol) | SASA energy (kcal/mol) | Electrostatic energy (kcal/mol) | Polar solvation energy (kcal/mol) | Binding energy (kcal/mol) |
---|---|---|---|---|---|---|
deoxycylindrospermopsin- SARS-CoV-2 protease Mpro | 20 | −40.68 ± 2.43 | −3.77 ± 0.43 | −8.92 ± 0.41 | 16.96 ± 1.23 | −36.41 ± 2.04 |
40 | −42.90 ± 2.16 | −3.96 ± 0.35 | −9.24 ± 0.52 | 17.71 ± 1.34 | −38.39 ± 1.69 | |
60 | −44.33 ± 2.76 | −4.08 ± 0.49 | −9.53 ± 0.39 | 18.20 ± 1.10 | −39.74 ± 2.54 | |
80 | −46.04 ± 2.34 | −4.14 ± 0.46 | −9.74 ± 0.47 | 18.56 ± 0.87 | −41.36 ± 2.40 | |
100 | −49.73 ± 1.98 | −4.21 ± 0.32 | −9.84 ± 0.45 | 18.91 ± 0.73 | −44.87 ± 2.02 | |
120 | −50.38 ± 1.65 | −4.25 ± 0.26 | −9.98 ± 0.31 | 19.17 ± 0.56 | −45.44 ± 1.66 | |
deoxycylindrospermopsin- SARS-CoV-2 protease PLpro | 20 | −38.29 ± 2.63 | −3.46 ± 0.34 | −8.20 ± 0.56 | 15.58 ± 1.34 | −34.37 ± 2.19 |
40 | −40.25 ± 2.45 | −3.64 ± 0.27 | −8.48 ± 0.61 | 16.27 ± 1.49 | −36.1 ± 1.84 | |
60 | −42.17 ± 2.58 | −3.75 ± 0.36 | −8.75 ± 0.43 | 16.72 ± 1.76 | −37.95 ± 1.61 | |
80 | −44.12 ± 2.32 | −3.89 ± 0.41 | −8.94 ± 0.52 | 17.05 ± 1.32 | −39.9 ± 1.93 | |
100 | −44.94 ± 2.15 | −3.97 ± 0.32 | −9.04 ± 0.41 | 17.37 ± 0.92 | −40.58 ± 1.96 | |
120 | −45.73 ± 1.79 | −4.10 ± 0.21 | −9.17 ± 0.36 | 17.61 ± 0.77 | −41.39 ± 1.59 |