Table 4.
Expensive molecular docking scores and MM-GBSA binding energies for DB02388 and Darunavir in complex with SARS-CoV-2 main protease (Mpro).
| Drug Name/Code | Docking Score (kcal/mol) | Calculated
MM-GBSA binding energy (kcal/mol) |
Binding Features (Hydrogen bond length in Å) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| ΔEVDW | ΔEele | ΔEGB | ΔESUR | ΔGgas | ΔGSolv | ΔGbinding | |||
| DB02388 | −11.74 | −63.78 | −10.93 | 31.58 | −6.54 | −74.70 | 25.03 | −49.67 | GLU166 (2.10 Å), TYR54 (2.19 Å), ASP187 (2.11 Å) |
| Darunavir (DB01264) | −8.19 | −47.37 | −15.12 | 33.82 | −6.15 | −62.50 | 27.67 | −34.83 | GLU166 (1.94 Å, 2.88 Å), LEU167 (1.96 Å) |