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. 2020 Aug 21;101:107716. doi: 10.1016/j.jmgm.2020.107716

Table 4.

Result of Molecular dynamics studies.

Ligand details Simulation
Time (ns)
RMSD average value RMSF Important Interactions (>30%) H bond residues (30%) Interaction with physiologically important residues
Grid 1 Acarbose 50ns 3.15 Å 3.0 Å Asn501, gly 496, gln493, ser494, tyr505, gly 502, Gln493, ser494, asn501 Asn501, gln493
Lactulose 50ns 3.0 Å 5.5 Å Insignificant interaction
Riboflavin 50ns 3.0 Å 1.2 Å Gln498,tyr505,arg403,tyr495,ser494, Tyr505,gln498,tyr495,ser494 Gln498
Mitoxantrone 50ns 3.5 Å 4.8 Å ARG403,GLN498, ASN501, Asn501,gln498,gly 496,arg403 GLN498, ASN501,
Cangrelor 50ns 2.1 Å 3.5 Å Ser494,gly 496,arg403,lys417 Arg403,ser494,lys417 lys417
Miglitol 50ns 2.5 Å 4.1 Å Insignificant interactions
Epinephrine 50ns 3.8 Å 2.8 Å Asp364 Asp364
Kanamycin 100ns 3.45 Å 3.2 Å Glu484, glu484 Glu484
Fenoterol 50ns 3.2 Å 0.8 Å Tyr449,tyr495,tyr505,arg403 Tyr495,arg403 Tyr449
Grid 2 Cangrelor 50ns 2.2 Å 0.9 Å Arg403,tyr495,glu406,lys417,arg408,gln409,thr415 Lys417,gln409,arg408 Lys417
Diosmin 50ns 2.5 Å 4.0 Å Insignificant interaction
Amphotericin B 50ns 2.4 Å Insignificant interaction
Leucovorin 50ns 2.7 Å 4.3 Å Insignificant interaction
Amikacin 50ns 3.1 Å 2.2 Å Tyr495,tyr453,arg403lys417,glu406 Arg403,glu406tyr453 Lys417,tyr453
Levomefolic acid 50ns 3.0 Å 1.0 Å Glu406,ile418, lys417,tyr453 Glu406,lys417,tyr453,ser494 Tyr453,lys417
Caspofungin 50ns 2.4 Å Insignificant interaction
Fenoterol 50ns 3.3 Å 3.8 Å Pro491,tyr489,phe 456
Grid 3 Pantethinone 50ns 2.8 Å 4.8 Å Ala 372 Asn481,pro479
Cytarabine 50ns 3.2 Å 5 Å Insignificant interaction
Ferrous ascorbate 50ns 2.9 Å 3.6 Å Insignificant interaction
Calcium ascorbate 50ns 2.25 Å 3.3 Å Insignificant interaction
Ascorbic acid 50ns 2.2 Å 3.2 Å Insignificant interaction
Ribavirin 50ns 2.8 Å 4.0 Å Insignificant interaction
Norepinephrine 50ns 2.15 Å 2.5 Å Insignificant interaction
Lamivudine 50ns 2.95 Å 3.6 Å Asn481,val 483,phe486 Asn481,gly 482,val 483,phe486, Phe486
Levosalbutamol 50ns 2.3 Å 3.0 Å Insignificant interaction
Epinephrine 50ns 2.65 Å 4.0 Å Insignificant interaction
Azacitidine 50ns 3 Å 4.5 Å Phe486 Phe486,asn487 Phe486,asn487
Pirbuterol 50ns 3.1 Å 7 Å Glu340 Glu340
Grid 4 Diosmin 50ns 2.15 Å 3.1 Å Tyr489
Mitoxantrone 50ns 2.5 Å 3.0 Å Arg403,gln498,asn501 Asn501,gln498,arg403, Asn501,gln498
Amikacin 50ns 3.15 Å 3.8 Å Tyr495,arg403,gly 496,glu484 Glu484,ser494,tyr495,gly 496,gln498,asn501 Asn501,gln498,glu484
Cangrelor 50ns 3.6 Å 1.2 Å Arg408,lys417 Arg403,arg408,lys417, Lys417
Fenoterol 50ns 3.95 Å 7 Å Insignificant interaction
Ribavirin 50ns 2.7 Å 3.2 Å Insignificant interaction
Gluconolactone 50ns 2.6 Å 4.7 Å Insignificant interaction
Vidarabine 50ns 2.6 Å 1.0 Å Gly496,gln498,tyr505 Gly496,gln498,tyr505 Gln498
Grid 5 Norepinephrine 50ns 3.25 Å 7.0 Å Lys458,glu471,asp467,ser469 Lys458,asp467,ser469,glu471
Miglitol 50ns 3.2 Å 4.1 Å Insignificant interaction
Nystatin (anti-fungal) 50ns Insignificant interaction
Tenapanor (Used in IBS) 50ns 2.3 Å Insignificant interaction
Sodium ascorbate 50ns 2.9 Å 7 Å Leu455 Leu455, phe 456, gln493 Gln493